PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_20970.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 415aa    MW: 46558.7 Da    PI: 4.8327
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_20970.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-1860150199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+k + +s+v k  +l +p +f+++h   ++ ++t+ lede+g +++ ++  rk++    l++GW +Fv  +gLk+gD v+F+l+g ++f  +v ++
  MLOC_20970.3  60 FVKLMRKSHVVKGFWLGVPLSFCRDHL--PKDDVTIALEDEDGHRFDTNYLARKQG----LSGGWHGFVVRHGLKVGDAVIFQLVGLKRF--KVYIL 148
                   89************************4..23679****************555555....9***********************998888..88888 PP

                   -S CS
            B3  98 rk 99 
                   r+
  MLOC_20970.3 149 RE 150
                   75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-2154151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-2356150IPR015300DNA-binding pseudobarrel domain
CDDcd100176.46E-2758149No hitNo description
SMARTSM010191.1E-2060151IPR003340B3 DNA binding domain
PROSITE profilePS5086313.02860151IPR003340B3 DNA binding domain
PfamPF023622.9E-1760150IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MLVDNTNISK SNKDMDADFE PEIPDGDVRK KYASVSGFYG SAFDRALEVE NKLPAEGPSF  60
VKLMRKSHVV KGFWLGVPLS FCRDHLPKDD VTIALEDEDG HRFDTNYLAR KQGLSGGWHG  120
FVVRHGLKVG DAVIFQLVGL KRFKVYILRE NKFTTTDGAL GLLSLDTSME NNIPDEKDEE  180
TWDEDAKSKE EDPEVTKVIT NKASEDDSCN DLFSEEAGND YIRSADADPG PDFNAMMKTF  240
RAFKTAIDSS AVIDRKLVPD RLLRTYYKLC GAKKALLHRR LPENINPTLA AGVIVETASI  300
AEGIRSYDPT TCEDLAAWKK TLESMELLGM DVGFMRKRVD ELLFLLDAAR PSLDGHAAPE  360
EGYKYNEEVM KLERGRAADK VRALESKMAS LKDALKEMDT EMEEIAEERR RGHAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_20970.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199236.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLM0V9U30.0M0V9U3_HORVV; Uncharacterized protein
STRINGMLOC_20970.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-36B3 family protein