PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_20970.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 472aa    MW: 53188.7 Da    PI: 8.2877
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_20970.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.2e-18107197199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+k + +s+v k  +l +p +f+++h   ++ ++t+ lede+g +++ ++  rk++    l++GW +Fv  +gLk+gD v+F+l+g ++f  +v ++
  MLOC_20970.2 107 FVKLMRKSHVVKGFWLGVPLSFCRDHL--PKDDVTIALEDEDGHRFDTNYLARKQG----LSGGWHGFVVRHGLKVGDAVIFQLVGLKRF--KVYIL 195
                   899***********************4..23679****************555555....9***********************998888..88888 PP

                   -S CS
            B3  98 rk 99 
                   r+
  MLOC_20970.2 196 RE 197
                   75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-21101198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-23103197IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-26105196No hitNo description
PROSITE profilePS5086313.028107198IPR003340B3 DNA binding domain
PfamPF023623.6E-17107197IPR003340B3 DNA binding domain
SMARTSM010191.1E-20107198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MMRTKNVKSE PGKHPGFRYK HKAQRTITKT SKRKKTGRPA GSKRYSKRKI VKKPMLVDNT  60
NISKSNKDMD ADFEPEIPDG DVRKKYASAF DRALEVENKL PAEGPSFVKL MRKSHVVKGF  120
WLGVPLSFCR DHLPKDDVTI ALEDEDGHRF DTNYLARKQG LSGGWHGFVV RHGLKVGDAV  180
IFQLVGLKRF KVYILRENKF TTTDGALGLL SLDTSMENNI PDEKDEETWD EDAKSKEEDP  240
EVTKVITNKA SEDDSCNDLF SEEAGNDYIR SADADPGPDF NAMMKTFRAF KTAIDSSAVI  300
DRKLVPDRLL RTYYKLCGAK KALLHRRLPE NINPTLAAGV IVETASIAEG IRSYDPTTCE  360
DLAAWKKTLE SMELLGMDVG FMRKRVDELL FLLDAARPSL DGHAAPEEGY KYNEEVMKLE  420
RGRAADKVRA LESKMASLKD ALKEMDTEME EIAEERRRGH AIAVLQLAAA PW
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_20970.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199236.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLM0V9U30.0M0V9U3_HORVV; Uncharacterized protein
STRINGMLOC_20970.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-36B3 family protein