PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_20970.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 479aa    MW: 53886.4 Da    PI: 8.2837
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_20970.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-18114204199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+k + +s+v k  +l +p +f+++h   ++ ++t+ lede+g +++ ++  rk++    l++GW +Fv  +gLk+gD v+F+l+g ++f  +v ++
  MLOC_20970.1 114 FVKLMRKSHVVKGFWLGVPLSFCRDHL--PKDDVTIALEDEDGHRFDTNYLARKQG----LSGGWHGFVVRHGLKVGDAVIFQLVGLKRF--KVYIL 202
                   899***********************4..23679****************555555....9***********************998888..88888 PP

                   -S CS
            B3  98 rk 99 
                   r+
  MLOC_20970.1 203 RE 204
                   75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-21108205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-23110204IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-26112203No hitNo description
PROSITE profilePS5086313.028114205IPR003340B3 DNA binding domain
PfamPF023623.7E-17114204IPR003340B3 DNA binding domain
SMARTSM010191.1E-20114205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MMRTKNVKSE PGKHPGFRYK HKAQRTITKT SKRKKTGRPA GSKRYSKRKI VKKPMLVDNT  60
NISKSNKDMD ADFEPEIPDG DVRKKYASVS GFYGSAFDRA LEVENKLPAE GPSFVKLMRK  120
SHVVKGFWLG VPLSFCRDHL PKDDVTIALE DEDGHRFDTN YLARKQGLSG GWHGFVVRHG  180
LKVGDAVIFQ LVGLKRFKVY ILRENKFTTT DGALGLLSLD TSMENNIPDE KDEETWDEDA  240
KSKEEDPEVT KVITNKASED DSCNDLFSEE AGNDYIRSAD ADPGPDFNAM MKTFRAFKTA  300
IDSSAVIDRK LVPDRLLRTY YKLCGAKKAL LHRRLPENIN PTLAAGVIVE TASIAEGIRS  360
YDPTTCEDLA AWKKTLESME LLGMDVGFMR KRVDELLFLL DAARPSLDGH AAPEEGYKYN  420
EEVMKLERGR AADKVRALES KMASLKDALK EMDTEMEEIA EERRRGHAIA VLQLAAAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_20970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199236.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLM0V9U30.0M0V9U3_HORVV; Uncharacterized protein
STRINGMLOC_20970.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-36B3 family protein