PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_20905.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 519aa MW: 56382.7 Da PI: 3.8446 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.1 | 7.9e-11 | 1 | 27 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLvf+ grapkg +t+Wvmheyrl MLOC_20905.2 1 MKKTLVFHAGRAPKGDRTNWVMHEYRL 27 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.073 | 1 | 45 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.22E-14 | 1 | 45 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MKKTLVFHAG RAPKGDRTNW VMHEYRLLDN DGPQDMHVVC RIFQKVGSGP QNGAQYGAPY 60 MEEEWEDEDD AIENTPTSGT STEMLAITDT ASAESNVEDE NIFSGINELV QIQDVLIPPE 120 IVAPIQAIAP LQAQGLNGTG MGSYADGDVS LDEILQEPVS DVSVDNTGEP EEQSPIDDHF 180 SLADLSGCPN QDDGYVRQAG LTMWSDPSNG DQAYYPIIRT YGNRNHANMA LSDAEYFDTE 240 NDTNAYFGQQ QACPSDDQNL YSGQQQACPS DDQNLYGPSF PQQVGDNEQF YEASSDHKWV 300 DGKDDCANVN DLSIFDDDIM SLLNASEGDF SLDLLGPVDG SNSQFPAASD FDQKDEAKAQ 360 YGASSSGSRE NLYPDSMVTD LPMDDNVGKR FGKFANMLGS YPAPPAMASE FPPTTGKSIA 420 ALSGPSQIRV TAGIVQLGDH SFTGNSDNWP LQKNGVFNLL LSFTVESNVS TKLIGFDDEP 480 ATTRVSTVPT VLRGGLYLFF VSAMILMLSF KVGSCIYSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_20905.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366470 | 0.0 | AK366470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043F06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195893.1 | 0.0 | NAC domain-containing protein 78-like | ||||
TrEMBL | F2DRF2 | 0.0 | F2DRF2_HORVV; Predicted protein | ||||
STRING | MLOC_20905.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 4e-25 | NAC domain containing protein 2 |