PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_20905.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 521aa MW: 56626 Da PI: 3.8668

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_20905.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.1	7.9e-11	1	27	102	128
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLvf+ grapkg +t+Wvmheyrl MLOC_20905.1 1 MKKTLVFHAGRAPKGDRTNWVMHEYRL 27 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-14	1	45	IPR003441	NAC domain
PROSITE profile	PS51005	21.073	1	45	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MKKTLVFHAG RAPKGDRTNW VMHEYRLLDN DGPQDMHVVC RIFQKVGSGP QNGAQYGAPY 60 MEEEWEDEDD AIENTPTSGT STEMLAITDT ASAESNVEDE NIFSGINELV QIQDVLIPPE 120 IVAPIQAIAP LQAQGLNGTG MGSYADGDVS LDEILQEPVS DVSVDNTGEP EEQSPIDDHF 180 SLADLSGCPN QDDGYVRQAG LTMWSDPSNG DQAYYPIIRT YGNRNHANMA LSDAEYFDTE 240 NDTNAYFGQQ QACPSDDQNL YSGQQQACPS DDQNLYGPSF PQQVGDNEQF YEASSDHKWV 300 DGKDDCANVN DLSIFDDDIM SLLNASEGDF SLDLLGPVDG SNSQFPAASD FDQKDEAKAQ 360 YGASSSGSRE NLYPDSMVTD LPMDDNVGKR FGKFANMLGS YPAPPAMASE FPPTTGKSIA 420 ALSGPSQIRV TAGIVQLGDH SFTGNSDNWP LQKNGVFNLL LSFTVESNVS TKLIGFDDEP 480 ATTRVSTVPT VLRGGLYLFF VSAMILMLSF KVGSCIYSRS R

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MKKTLVFHAG RAPKGDRTNW VMHEYRLLDN DGPQDMHVVC RIFQKVGSGP QNGAQYGAPY  60
MEEEWEDEDD AIENTPTSGT STEMLAITDT ASAESNVEDE NIFSGINELV QIQDVLIPPE  120
IVAPIQAIAP LQAQGLNGTG MGSYADGDVS LDEILQEPVS DVSVDNTGEP EEQSPIDDHF  180
SLADLSGCPN QDDGYVRQAG LTMWSDPSNG DQAYYPIIRT YGNRNHANMA LSDAEYFDTE  240
NDTNAYFGQQ QACPSDDQNL YSGQQQACPS DDQNLYGPSF PQQVGDNEQF YEASSDHKWV  300
DGKDDCANVN DLSIFDDDIM SLLNASEGDF SLDLLGPVDG SNSQFPAASD FDQKDEAKAQ  360
YGASSSGSRE NLYPDSMVTD LPMDDNVGKR FGKFANMLGS YPAPPAMASE FPPTTGKSIA  420
ALSGPSQIRV TAGIVQLGDH SFTGNSDNWP LQKNGVFNLL LSFTVESNVS TKLIGFDDEP  480
ATTRVSTVPT VLRGGLYLFF VSAMILMLSF KVGSCIYSRS R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_20905.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366470	0.0	AK366470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043F06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020195893.1	0.0	NAC domain-containing protein 78-like
TrEMBL	F2DRF2	0.0	F2DRF2_HORVV; Predicted protein
STRING	MLOC_20905.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12931	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	4e-25	NAC domain containing protein 2