PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_20326.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 172aa MW: 18754.6 Da PI: 10.3115

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_20326.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50	6.5e-16	111	162	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkke 55 +r+rr++kNRe+A rsRqRK+a+i eLe +v++L++ N+aL+k ++e+l+k+ MLOC_20326.1 111 RRQRRMIKNRESAARSRQRKQAYIMELEAEVAKLKENNEALQKkQVEMLQKQ 162 79***************************************75145666554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-14	107	172	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.093	109	154	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-12	111	157	No hit	No description
Pfam	PF00170	3.0E-14	111	162	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-15	111	162	No hit	No description
CDD	cd14707	4.80E-25	111	165	No hit	No description
PROSITE pattern	PS00036	0	114	129	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MTLEEFLVRA GVVREDMGGQ TVVVPARAQA LFPQGNVVAP TMQVGNGVVH GVVGQGAGVP 60 MTVAAPTTPG VLNGFGKMEG GDLSSLSPVP YPFDTVTRAR KGPTVEKVVE RRQRRMIKNR 120 ESAARSRQRK QAYIMELEAE VAKLKENNEA LQKKQVEMLQ KQKDEVIPFA EN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in abscisic acid (ABA) signaling pathway (PubMed:20576316, PubMed:19947981, PubMed:21546455, PubMed:22301130, PubMed:26300907, PubMed:27468891). Transcription factor activity is fully activated by ABA (PubMed:19947981, PubMed:26300907, PubMed:27468891). Acts as positive regulator of the expression of abiotic stress-responsive genes through an ABA-dependent signaling pathway (PubMed:20576316). Acts as positive regulator of ABA signaling and drought stress tolerance (PubMed:22301130). Plays an important role in ABA and auxin responses. Involved in ABA signaling and stress responses by directly binding to the ABA-responsive element (ABRE)-containing genes, especially WRKY family genes. Modulates response to auxin. Suppresses auxin signaling by targeting ABRE-containing genes related to auxin metabolism or signaling (PubMed:21546455). {ECO:0000269\|PubMed:19947981, ECO:0000269\|PubMed:20576316, ECO:0000269\|PubMed:21546455, ECO:0000269\|PubMed:22301130, ECO:0000269\|PubMed:26300907, ECO:0000269\|PubMed:27468891}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00038	PBM	Transfer from AT4G34000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_20326.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) (PubMed:20576316, PubMed:18315698, PubMed:21546455, PubMed:22301130). Induced by auxin (PubMed:21546455, PubMed:22301130). Induced by gibberellin (PubMed:21546455). Induced by salt and drought stresses (PubMed:20576316, PubMed:21546455, PubMed:22301130). Induced by cold stress (PubMed:20576316). Induced by oxidative stress (PubMed:20576316, PubMed:22301130). {ECO:0000269\|PubMed:18315698, ECO:0000269\|PubMed:20576316, ECO:0000269\|PubMed:21546455, ECO:0000269\|PubMed:22301130}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363330	0.0	AK363330.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2014H23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197149.1	1e-112	ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1
Swissprot	Q69TW5	1e-75	BZP46_ORYSJ; bZIP transcription factor 46
TrEMBL	F2DHG3	1e-113	F2DHG3_HORVV; Predicted protein
STRING	MLOC_20326.2	1e-116	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-35	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Hossain MA, et al. The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice. J. Plant Physiol., 2010. 167(17): p. 1512-20 [PMID:20576316] Yang X, et al. Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes. Plant Physiol., 2011. 156(3): p. 1397-409 [PMID:21546455] Li YS, et al. A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice. Mol. Biotechnol., 2013. 54(2): p. 703-10 [PMID:23086454] Guo C,Ge X,Ma H The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant Mol. Biol., 2013. 82(3): p. 239-53 [PMID:23686450] Huang X, et al. OsSLI1, a homeodomain containing transcription activator, involves abscisic acid related stress response in rice (Oryza sativa L.). ScientificWorldJournal, 2014. 2014: p. 809353 [PMID:25089296] Kim N, et al. Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts. Front Plant Sci, 2015. 6: p. 614 [PMID:26300907] Chen H, et al. Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice. Genet. Mol. Res., 2015. 14(4): p. 11994-2005 [PMID:26505346] Tang N, et al. MODD Mediates Deactivation and Degradation of OsbZIP46 to Negatively Regulate ABA Signaling and Drought Resistance in Rice. Plant Cell, 2016. 28(9): p. 2161-2177 [PMID:27468891]