PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_1969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 93aa MW: 10271.3 Da PI: 5.7469 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.5 | 1.7e-06 | 1 | 13 | 44 | 56 |
HHHHHHHHHHHHH CS Homeobox 44 VkvWFqNrRakek 56 V vWFqNrRa++k MLOC_1969.1 1 VAVWFQNRRARWK 13 89**********9 PP | |||||||
2 | HD-ZIP_I/II | 67.9 | 2.2e-22 | 1 | 51 | 43 | 93 |
HD-ZIP_I/II 43 vavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 vavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++e+L +e+k+ MLOC_1969.1 1 VAVWFQNRRARWKTKQLERDYNALRHSYDALRLDHDALRRDKEALLAEIKD 51 8*********************************************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.572 | 1 | 15 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-7 | 1 | 22 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.93E-6 | 1 | 27 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.26E-4 | 1 | 16 | No hit | No description |
Pfam | PF02183 | 4.4E-18 | 15 | 56 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 93 aa Download sequence Send to blast |
VAVWFQNRRA RWKTKQLERD YNALRHSYDA LRLDHDALRR DKEALLAEIK DLKGKLGDEE 60 AAASFTSVKE EPAASDGPPP AGMGSSDSDS SGV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 7 | 15 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_1969.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK354063 | 1e-150 | AK354063.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004L21. | |||
GenBank | AK355887 | 1e-150 | AK355887.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027I19. | |||
GenBank | AK364089 | 1e-150 | AK364089.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021J14. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148015.1 | 4e-59 | homeobox-leucine zipper protein HOX4-like | ||||
Swissprot | Q6K498 | 3e-48 | HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q9XH37 | 3e-48 | HOX4_ORYSI; Homeobox-leucine zipper protein HOX4 | ||||
TrEMBL | A0A287RPU1 | 2e-58 | A0A287RPU1_HORVV; Predicted protein | ||||
STRING | MLOC_1969.1 | 2e-61 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3009 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22430.1 | 2e-22 | homeobox protein 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|