PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_18435.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 840aa MW: 94206.5 Da PI: 8.9007 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.3 | 3.6e-10 | 300 | 385 | 7 | 97 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ ++ + l +p + ae+ +++ +++ + led++g+s v+l + +g+ + +GW +Fv+++ +k +++vF+++g s+f v+vf MLOC_18435.5 300 QNKHFMEF-LLIPPDVAEAPKMVGLTNRHVCLEDSEGKSSIVRL--SEVDGSLAFCQGWDNFVSDHSIKWAEMLVFEYTGCSKF--SVRVF 385 45555554.89999999888666667788***************..9999999999**********************986777..88877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.489 | 293 | 388 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-14 | 294 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-13 | 294 | 386 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.58E-9 | 295 | 385 | No hit | No description |
Pfam | PF02362 | 6.5E-8 | 300 | 385 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MSRDALARQN RPRSRDDEEE GETCKMQSKE EEEVETCKMQ SKEEEEEVEV EMFDKRFQIR 60 KASTGSLGKG KRIEEPIELS DSDDHDEDYK MEKAAKYKEK KRIHNHSGDH KKKKKKHVSS 120 HGREKTRSGD SDKDKRRDKL LSLNKNKDHL PLKEKSWERP SSQGGEKKMH RCDHHNDNRS 180 SKMWRSVYDK YKGMQKKEMN KDTKLRPVHN GDSREEKKNT TLVISKEAKM PMLDNSNWGN 240 KRKMTTMVPH KAKKLRTSDK DEKAGSYDRK KTIRGNTGQR VQSGLKEDKK VKFAFSKVIQ 300 NKHFMEFLLI PPDVAEAPKM VGLTNRHVCL EDSEGKSSIV RLSEVDGSLA FCQGWDNFVS 360 DHSIKWAEML VFEYTGCSKF SVRVFGVNSW ERVSFSLERR GEEKKQKESD HAPNDLVPFH 420 TVGSSRDIDD HHYSSGEYIG SKRPKAKSGG YTDNAVVSPG NLVAKSMNAV PGARRMSANS 480 TQDPSGVVGG IVRGSSMAPE NKDGYSANGK HTANTIFSSY SRGTTRTPET TAIPDEAPLA 540 QENEDMVALD NKELNLPIGG CKTKCDTSVT CNNEKTTRFG IVPVTADEAP LSQENGDAVE 600 LTAFPRHIED AVMMKGSTSA QCAEIHGSIE DLRRKQEGNT VQLECTAAVD KCTKNNKMDT 660 NRNTCSKYEY PGASQCLEKW KEASVSGREA LDGTGLIRRE KGLKTEEKSV GAIGVNPVER 720 GYDSTHSCVP SQISKSGLTR TKNEHSVNGK DNTVKPETKM EQMGPMESIG CRQERTNIPA 780 SANRAVERQT EHHFFRQGDT KSSNPVPLVL PVKVEVSELD DHPVLKANLQ FVVPSSAQTR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 115 | KKRIHNHSGDHKKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_18435.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196102.1 | 0.0 | B3 domain-containing protein Os02g0598200-like | ||||
Refseq | XP_020196103.1 | 0.0 | B3 domain-containing protein Os02g0598200-like | ||||
TrEMBL | M0V513 | 0.0 | M0V513_HORVV; Uncharacterized protein | ||||
STRING | MLOC_18435.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-06 | B3 family protein |