PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18038.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 324aa    MW: 35845.5 Da    PI: 8.3325
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18038.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.16e-17471241598
                   -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    +++p +fa++++g    s  + l+ + g+sW++k+   +   + vl++GWkeF +a+g++egD ++Fk++g s+f   v +f+
  MLOC_18038.2  47 TMSVPGRFAKKFDGH--ISEAINLKPPGGKSWSIKV--AGDTAGLVLRSGWKEFLDAHGIEEGDGLLFKYSGASSF--DVLMFD 124
                   599*********777..6678***************..999999***************************99999..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2131128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-2132132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.31133126IPR003340B3 DNA binding domain
CDDcd100172.89E-1734124No hitNo description
SMARTSM010194.4E-636126IPR003340B3 DNA binding domain
PfamPF023621.3E-1447120IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-9248324IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-10248324IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-8252324No hitNo description
PROSITE profilePS508638.91257324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MIPSPPMQKM GKNCERCTKW QEHCYWSHMA DEKKHLFKLM VGDFAETMSV PGRFAKKFDG  60
HISEAINLKP PGGKSWSIKV AGDTAGLVLR SGWKEFLDAH GIEEGDGLLF KYSGASSFDV  120
LMFDPTGCQK PPSPRPVKRR GCDDDTEENS AGAKDRRCGY HASNKDEERA PHPPPAANGD  180
GAGLELTLYR GAGKSIALAD QEGVGMDHGD APANAKTRYY FCKNGPVSEF HLTEEDKEEI  240
SSIPVPAEPR NPVFVNVMHP NHVCAATRTS IVRVPPEFAA RHLQTIGREI VLRRAGGKGR  300
WHVRYAAGDH YRGFCGRGWR DFAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139RPVKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18038.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189910.11e-176B3 domain-containing protein Os03g0622200-like
SwissprotQ10GM33e-98Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A3B6IMA60.0A0A3B6IMA6_WHEAT; Uncharacterized protein
TrEMBLA0A446RU560.0A0A446RU56_TRITD; Uncharacterized protein
STRINGMLOC_18038.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-24B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]