PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_18038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 194aa MW: 21192.8 Da PI: 7.534 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.6 | 2e-17 | 37 | 115 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++p +fa++++g s + l+ + g+sW++k+ + + vl++GWkeF +a+g++egD ++Fk++g s+f v +f+ MLOC_18038.1 37 ETMSVPGRFAKKFDGH--ISEAINLKPPGGKSWSIKV--AGDTAGLVLRSGWKEFLDAHGIEEGDGLLFKYSGASSF--DVLMFD 115 4599*********777..6678***************..999999***************************99999..676665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-22 | 21 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-22 | 23 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.311 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-17 | 25 | 115 | No hit | No description |
SMART | SM01019 | 4.4E-6 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-15 | 38 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGKNCERCTK WQEHCYWSHM ADEKKHLFKL MVGDFAETMS VPGRFAKKFD GHISEAINLK 60 PPGGKSWSIK VAGDTAGLVL RSGWKEFLDA HGIEEGDGLL FKYSGASSFD VLMFDPTGCQ 120 KPPSPRPVKR RGCDDDTEEN SAGAKDRRCG YHASNKDEER APHPPPAANG DGAGLELTLY 180 RGAGKSIALA GKHD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 130 | RPVKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_18038.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189910.1 | 1e-107 | B3 domain-containing protein Os03g0622200-like | ||||
Refseq | XP_020199404.1 | 1e-109 | B3 domain-containing protein Os03g0622200-like, partial | ||||
Swissprot | Q10GM3 | 4e-60 | Y3222_ORYSJ; B3 domain-containing protein Os03g0622200 | ||||
TrEMBL | A0A287N8R9 | 1e-138 | A0A287N8R9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_18038.2 | 1e-138 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-25 | B3 family protein |
Publications ? help Back to Top | |||
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