PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16598.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 274aa    MW: 31382.4 Da    PI: 5.5797
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16598.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13158204147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g WTteE+ l++++ +  G g Wk I++++ + Rt+ q+ s+ qky
     MLOC_16598.1 158 KGYWTTEEHRLFLRGLHVCGRGKWKDISKYFVTSRTPAQISSHAQKY 204
                      689*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.026153209IPR017930Myb domain
SMARTSM007174.9E-10157207IPR001005SANT/Myb domain
SuperFamilySSF466893.73E-16158210IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-10158204IPR009057Homeodomain-like
PfamPF002493.9E-11158204IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.6E-12160207IPR006447Myb domain, plants
CDDcd001671.42E-8161205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNQRVNQEWN PSEVEGARSI IDFLNNYYNN DGTNHDKNKK HAIVANLQGR FPRKTMQQVT  60
SLYDDLVVEM NILKCPEKEY DGTNSFHGVN YTVDGLMNKN FGLQEEVDME GMGLLFGHPL  120
ETMPTMEIQE EVPIVEENKV ELENKMCIHQ PVIAAHAKGY WTTEEHRLFL RGLHVCGRGK  180
WKDISKYFVT SRTPAQISSH AQKYFMKLQK EGSGIQRYSI NNVELDAADP WKMDNSFNFW  240
QALALQSTIG ASDQNPTLDV QTPLGPFVTM NNTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156757.11e-152uncharacterized protein LOC109742093
TrEMBLA0A287VRB20.0A0A287VRB2_HORVV; Uncharacterized protein
STRINGMLOC_16598.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.17e-18MYB_related family protein