PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_16480.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 97aa MW: 10837.7 Da PI: 10.0867 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46 | 9.4e-15 | 13 | 92 | 20 | 99 |
HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 20 kkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 f++e+ +++ + + +++ ++W +l r k+++ ++ +GW++F+++n+Lk gD+++Fk ++ s+ ++v+++rk MLOC_16480.6 13 LGFCNEYasT--LPSGDQTLMLQLEDKEWPTTL--RVKGSKKIICRGWSKFASDNNLKLGDICLFKIAeRStSSLAMRVHFIRK 92 5688888542..33444455677899*******..77777778999********************763556788888888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.4E-4 | 1 | 93 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.29E-14 | 1 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.35E-12 | 1 | 91 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-15 | 2 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-12 | 12 | 92 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 29 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MTKSCVGGKL FSLGFCNEYA STLPSGDQTL MLQLEDKEWP TTLRVKGSKK IICRGWSKFA 60 SDNNLKLGDI CLFKIAERST SSLAMRVHFI RKSGVFL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_16480.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3B6HVR8 | 1e-45 | A0A3B6HVR8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446R6I0 | 1e-45 | A0A446R6I0_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446R6I2 | 1e-45 | A0A446R6I2_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_538993FFD.1 | 2e-46 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-10 | B3 family protein |