PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_16480.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 412aa    MW: 46436.7 Da    PI: 7.8222
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_16480.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46e-14341141097
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    +k++ +++p++  ++    ++ s t++l  ++gr ++v ++     g+ vl++GW  Fv a++++e+D+++F ++g+s+f   +++f
  MLOC_16480.5  34 DFKNC-IRIPRELSTHLR--SRISDTIKLDVPNGRAYDVVVS--WEFGELVLRSGWDAFVTAHHIEENDTFLFIYHGNSNF--EIHIF 114
                   45565.99****974444..45888****************5..555679***************************9999..66666 PP
2B346.66.1e-151892691096
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   + k + + +p + + +h +++++s  ++le ++g+ ++v+   +k+s+  +vl++GW  Fv an+++ +D ++F+    s+++ ++k+
  MLOC_16480.5 189 NVKDCSINIPLRLV-SHFKEETCSAVIKLEAPDGNIYNVRA--SKHSEDqVVLQSGWDAFVAANHIQKNDLLIFH----SKGKIRLKI 269
                   56778999*****9.6767789*******************..7777777*************************....445455544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-1722119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.51924117IPR003340B3 DNA binding domain
SMARTSM010190.002327117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-1727119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-1435115No hitNo description
PfamPF023625.9E-1235115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-15171276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-16174282IPR015300DNA-binding pseudobarrel domain
CDDcd100179.11E-16177290No hitNo description
PROSITE profilePS5086310.109180275IPR003340B3 DNA binding domain
SMARTSM010190.0019182275IPR003340B3 DNA binding domain
PfamPF023624.1E-12189267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNEDCESCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNCIR IPRELSTHLR SRISDTIKLD  60
VPNGRAYDVV VSWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE  120
KMASCFQPPS EIFGAFPPGH VQTQLEFDYT MSIGCNLTKS QDEKVLEIAR KIRSEIPLYV  180
AIMKKINVNV KDCSINIPLR LVSHFKEETC SAVIKLEAPD GNIYNVRASK HSEDQVVLQS  240
GWDAFVAANH IQKNDLLIFH SKGKIRLKIL ALDPSGHEKN PSCFDMKIFS KTGEGSVRIP  300
DARPRTVEVI DLTSSDDDHT EREDAGRSTG RRKKVPGSHA KARKMAPASS PSTKSGSDTH  360
KLKLPISNND NLQGPSRPPY ILARGITLTG RVEKKVQEKV QAIGSEVLSM WQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_16480.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0V0P20.0M0V0P2_HORVV; Uncharacterized protein
STRINGMLOC_16480.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-22B3 family protein