PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_16480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 419aa MW: 47118.4 Da PI: 7.6243 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.4 | 6.1e-14 | 34 | 114 | 10 | 97 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +k++ +++p++ ++ ++ s t++l ++gr ++v ++ g+ vl++GW Fv a++++e+D+++F ++g+s+f +++f MLOC_16480.1 34 DFKNC-IRIPRELSTHLR--SRISDTIKLDVPNGRAYDVVVS--WEFGELVLRSGWDAFVTAHHIEENDTFLFIYHGNSNF--EIHIF 114 45565.99****974444..45888****************5..555679***************************9999..66666 PP | |||||||
2 | B3 | 46.6 | 6.3e-15 | 196 | 276 | 10 | 96 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + k + + +p + + +h +++++s ++le ++g+ ++v+ +k+s+ +vl++GW Fv an+++ +D ++F+ s+++ ++k+ MLOC_16480.1 196 NVKDCSINIPLRLV-SHFKEETCSAVIKLEAPDGNIYNVRA--SKHSEDqVVLQSGWDAFVAANHIQKNDLLIFH----SKGKIRLKI 276 56778999*****9.6767789*******************..7777777*************************....445455544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.49E-17 | 22 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.519 | 24 | 117 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0023 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-17 | 27 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-14 | 35 | 115 | No hit | No description |
Pfam | PF02362 | 6.1E-12 | 35 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-15 | 178 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-16 | 181 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.10E-16 | 184 | 297 | No hit | No description |
PROSITE profile | PS50863 | 10.109 | 187 | 282 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0019 | 189 | 282 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-12 | 196 | 274 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MNEDCESCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNCIR IPRELSTHLR SRISDTIKLD 60 VPNGRAYDVV VSWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE 120 KMASCFQPPS EIFGAFPPEQ AAPNAGHVQT QLEFDYTMSI GCNLTKSQDE KVLEIARKIR 180 SEIPLYVAIM KKINVNVKDC SINIPLRLVS HFKEETCSAV IKLEAPDGNI YNVRASKHSE 240 DQVVLQSGWD AFVAANHIQK NDLLIFHSKG KIRLKILALD PSGHEKNPSC FDMKIFSKTG 300 EGSVRIPDAR PRTVEVIDLT SSDDDHTERE DAGRSTGRRK KVPGSHAKAR KMAPASSPST 360 KSGSDTHKLK LPISNNDNLQ GPSRPPYILA RGITLTGRVE KKVQEKVQAI GSEVLSMWQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_16480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0V0P2 | 0.0 | M0V0P2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_16480.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-22 | B3 family protein |