PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_15705.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 323aa MW: 36844.3 Da PI: 6.5962

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_15705.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59	1.5e-18	49	142	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 Y+ +Ak++GFs+r+++++ + + t+r fvC + g++ + + k++r+r+++r+gC+a l++ ++ +w+vt ++++HnHel MLOC_15705.3 49 LYSGFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKPFDdGAKQQRNRKSSRCGCQAYLRIGRDAgagGLEWRVTGFSNHHNHELL 142 79**********9998877356667999*****998887664678899*************99877789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-16	49	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-7	265	315	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MERPNSGEEG EGDSPNETRI SLETAAAEAD DSVPYIGQRF LTHEAAYELY SGFAKQCGFS 60 IRRHRTEGKD GVGKGLTRRY FVCHRAGNTP AKPFDDGAKQ QRNRKSSRCG CQAYLRIGRD 120 AGAGGLEWRV TGFSNHHNHE LLRQDEVRFL PAYRVISDSD RDRILVFAKS GISVQQMMRI 180 MELEKCVQPG TLPFTEKDVR NLIQSFRRFE HQEESVDLLQ MCRNVKEKDP NFRYDFTKDA 240 NNCLENIAWS YASSIQSYEV FGDAVVFDTT HRLISIDMAL GIWIGMNNHG MPCFFSCALL 300 REENLQSFTW ALQEQKSPSN NID

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_15705.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248760	0.0	AK248760.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf2n05, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180634.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	1e-161	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	M0UYK0	0.0	M0UYK0_HORVV; Uncharacterized protein
STRING	MLOC_15705.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-163	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]