PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_15705.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 667aa    MW: 75903.9 Da    PI: 7.3007
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_15705.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.35.1e-1849142290
          FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                    Y+ +Ak++GFs+r+++++ +    +  t+r fvC + g++  +  +   k++r+r+++r+gC+a l++ ++      +w+vt ++++HnHel 
  MLOC_15705.2  49 LYSGFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKPFDdGAKQQRNRKSSRCGCQAYLRIGRDAgagGLEWRVTGFSNHHNHELL 142
                   79************9998877356667999*********998887664678899*****************99877789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1549142IPR004330FAR1 DNA binding domain
PfamPF105513.0E-17265350IPR018289MULE transposase domain
PROSITE profilePS509669.854541577IPR007527Zinc finger, SWIM-type
PfamPF044344.0E-8548576IPR007527Zinc finger, SWIM-type
SMARTSM005757.6E-6552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MERPNSGEEG EGDSPNETRI SLETAAAEAD DSVPYIGQRF LTHEAAYELY SGFAKQCGFS  60
IRRHRTEGKD GVGKGLTRRY FVCHRAGNTP AKPFDDGAKQ QRNRKSSRCG CQAYLRIGRD  120
AGAGGLEWRV TGFSNHHNHE LLRQDEVRFL PAYRVISDSD RDRILVFAKS GISVQQMMRI  180
MELEKCVQPG TLPFTEKDVR NLIQSFRRFE HQEESVDLLQ MCRNVKEKDP NFRYDFTKDA  240
NNCLENIAWS YASSIQSYEV FGDAVVFDTT HRLISIDMAL GIWIGMNNHG MPCFFSCALL  300
REENLQSFTW ALQVFLNFMN RKAPQTILTD QNKYLKEAVQ KELPNTKHAF SIGLLASRFP  360
SWFSAVLGGH YNDWEVEFYR LYNMESTMDF DLGWSDMVSC YGLHGNRHIA SLFASRNLWA  420
SPYLRGHFLA GLTALPGVSK IKDFIQRLLS TQICLSRFIE QVAIVVDYKD QAGEQQIAQQ  480
SLENTILKTA APVEGHAAAV FTPYAFCKLQ DELVGAAHYA YFHLEGNAYL VRHHTTTDGG  540
CNVTWNQKEE LISCSCQMFE SSGILCRHAL RLLTTLNYFQ IPDHYVPVRW RRTQAQPSKS  600
LISAPHYGRS YERVKELQSM VAVLVSEASQ SEERMDLATQ EVSVLLSRIK QQPVVANVSG  660
DSVRRLW
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_15705.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2487600.0AK248760.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf2n05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180634.10.0protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLM0UYJ40.0M0UYJ4_HORVV; Uncharacterized protein
STRINGMLOC_15705.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]