PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_14363.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 24451 Da PI: 10.0873 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.9e-06 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H MLOC_14363.3 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.4e-05 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ MLOC_14363.3 82 WKCEKCSKKYAVQSDWKAHTKTC 104 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.8E-7 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.7E-6 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 2.8E-5 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 47 | 77 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 70 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.8E-7 | 77 | 102 | No hit | No description |
SMART | SM00355 | 130 | 82 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSGK EVRKRVYVCP EPSCVHHDAS 60 RALGDLTGIK KHFCRKHGEK KWKCEKCSKK YAVQSDWKAH TKTCGSREYR CDCGTLFSRR 120 DSFITHRAFC DALAEESAKA RAPPAEDASS GAAGPLALPP LQAPLPAAPA PLQQLPPAPA 180 PQQHEEQGKD GQRTTVRPSI LAALAQVRSN LTVPWVLPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-36 | 78 | 139 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 6e-36 | 78 | 139 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_14363.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375990 | 0.0 | AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152675.1 | 1e-106 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 4e-95 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A287PK59 | 1e-136 | A0A287PK59_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287PKA2 | 1e-136 | A0A287PKA2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_14363.1 | 1e-137 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 2e-84 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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