PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_14005.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 144aa    MW: 16145 Da    PI: 4.7866
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_14005.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.5e-17186598
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  +++s+v++  +l lp +f+++h  ++ ++ +++lede+g +++  +   +++ +  l++GW++F   ++L++gD++vF+l + ++f  ++ +f+
  MLOC_14005.1  1 MVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLVFELAEPDRF--KIYIFK 86
                  57899**************9994.44.4459***************..555444..***********************9876777..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.421188IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-20186IPR015300DNA-binding pseudobarrel domain
PfamPF023625.9E-16186IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-17187IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.4E-17188IPR003340B3 DNA binding domain
CDDcd100174.18E-24186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MVRSHVSSCF WLGLPSSFCK DHLPPREHKM VLEDEEGVEF DAVYIGNRTG LSGGWRGFSM  60
HHDLEDGDSL VFELAEPDRF KIYIFKAIED AKEAEPNGKN ADMDTADTNS AEEVLDQMDS  120
PVSEPPSSPE PLKGAKKRKL HGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_14005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719300.0AK371930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2143H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158104.12e-80B3 domain-containing protein Os05g0481400
SwissprotQ5KQI45e-67Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A287G3K51e-103A0A287G3K5_HORVV; Uncharacterized protein
TrEMBLA0A287G3L21e-103A0A287G3L2_HORVV; Uncharacterized protein
TrEMBLF2E7061e-103F2E706_HORVV; Predicted protein (Fragment)
STRINGMLOC_14005.11e-103(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-34B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]