PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_13932.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 36726.5 Da PI: 6.9389 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.1 | 1.5e-52 | 34 | 162 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeelv++yL++kv + ++ v i+evd++++ePwdLp++++ +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+evl++ MLOC_13932.1 34 LPPGFRFHPTDEELVTFYLAAKVFNGTCCG-GVdIAEVDLNRCEPWDLPEAARMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVLNAa 129 79*************************888.455***************9888999**************************************987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+l g+kktLvfy+grap+gekt+Wv+heyrl MLOC_13932.1 130 TGSLLGMKKTLVFYRGRAPRGEKTKWVLHEYRL 162 8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-62 | 25 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.756 | 34 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-27 | 35 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MHQHQPAAAM GDALWELIGE EMAAAEAAAG EHGLPPGFRF HPTDEELVTF YLAAKVFNGT 60 CCGGVDIAEV DLNRCEPWDL PEAARMGERE WYFFSLRDRK YPTGLRTNRA TGAGYWKATG 120 KDREVLNAAT GSLLGMKKTL VFYRGRAPRG EKTKWVLHEY RLDGDFGAVR RSCKEEWVVC 180 RIFHKAVDQY SKMMEMRNPY CYFPMTPHHP SFFQDAPPVP FPNPSQLIPF HHDLPHLQSS 240 PLIQGQAKNT SNNSNGGFPA AASIQEQPNS SCNPAYFPFP SFASIVNGKA GPPAQPGVNG 300 GPQEPPPTWL DACLQHSAFM YEMGPPAATR GA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-49 | 22 | 185 | 3 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_13932.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375432 | 0.0 | AK375432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3094D13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165224.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 5e-86 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | F2EH05 | 0.0 | F2EH05_HORVV; Predicted protein (Fragment) | ||||
STRING | MLOC_13932.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11237 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 3e-85 | NAC family protein |
Publications ? help Back to Top | |||
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