PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_13636.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | G2-like | ||||||||
Protein Properties | Length: 152aa MW: 17030.6 Da PI: 11.2661 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.2 | 5.9e-26 | 23 | 78 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekA..tPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt eL + Fv+av++LG + A tPk+ilelm+v+gLt++hvkSHLQ+YR MLOC_13636.2 23 PRMRWTAELESGFVRAVDRLGSRDSAkvTPKRILELMDVQGLTISHVKSHLQMYRC 78 8*******************99876555***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 19 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-13 | 22 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-21 | 23 | 77 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.3E-9 | 24 | 77 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MAKKQEAWRR GGFVRRYTRS SVPRMRWTAE LESGFVRAVD RLGSRDSAKV TPKRILELMD 60 VQGLTISHVK SHLQMYRCTP HGNKGKQGGG GAKNPCAFLP AEMQPQLGLK NHPFATDERG 120 SEGLTFPPMK RGGQVQGRGR DCSLMQEHAR KQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-15 | 24 | 78 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-15 | 24 | 78 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-15 | 24 | 78 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-15 | 24 | 78 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-15 | 24 | 78 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-15 | 24 | 78 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-15 | 24 | 78 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-15 | 24 | 78 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-15 | 24 | 78 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-15 | 24 | 78 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-15 | 24 | 78 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-15 | 24 | 78 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_13636.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756067.1 | 2e-43 | myb-related protein 2 | ||||
TrEMBL | A0A287UG85 | 1e-92 | A0A287UG85_HORVV; Uncharacterized protein | ||||
STRING | MLOC_13636.1 | 7e-79 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 7e-23 | G2-like family protein |