PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_13062.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 316aa    MW: 34189.2 Da    PI: 10.5081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_13062.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-1761106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
     MLOC_13062.2  61 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 106
                      899*****************************.***********996 PP
2Myb_DNA-binding61.32e-19114157247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ +
     MLOC_13062.2 114 RPFTEEEEERLLAAHRVHGNK-WALIARHFP-GRTDNAVKNHWHVV 157
                      69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.74156107IPR017930Myb domain
SuperFamilySSF466895.24E-3060154IPR009057Homeodomain-like
SMARTSM007172.1E-1460109IPR001005SANT/Myb domain
PfamPF002491.0E-1661106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2762114IPR009057Homeodomain-like
CDDcd001673.20E-1464105No hitNo description
PROSITE profilePS5129428.456108162IPR017930Myb domain
SMARTSM007171.9E-16112160IPR001005SANT/Myb domain
PfamPF002492.7E-16113156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21115157IPR009057Homeodomain-like
CDDcd001671.56E-8124155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGPLGTKNGL ASSLKRSWEL SREPGLHHGL FFSGRRRPMA ASSSTTNTSE GGAKPSSLCP  60
RGHWRPGEDE KLRQLVEKYG PQNWNSIAEK LEGRSGKSCR LRWFNQLDPR INKRPFTEEE  120
EERLLAAHRV HGNKWALIAR HFPGRTDNAV KNHWHVVRAR RSRERCRLLA KAASSTFPSY  180
SYSGGAQLDF TGASAGSFCF GFSKPGGGGF FGSPPAAAAA PSSTPVLFNG YGVGASGSKS  240
LLSRYSSYVD GGKQPAAPSS LSIAFSSPPS IEALALDGRG GHDHHRRKDY HVDGDEPLKT  300
KDAPPFIDFL GVGVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-31611614104C-Myb DNA-Binding Domain
1msf_C2e-31611614104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_13062.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519100.0JF951910.1 Triticum aestivum clone TaMYB27 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156227.11e-167transcription factor RAX1-like
TrEMBLM0UQA30.0M0UQA3_HORVV; Uncharacterized protein
STRINGMLOC_13062.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.16e-57myb domain protein 52