PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12999.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 568aa    MW: 63218.4 Da    PI: 6.062
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12999.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.35.9e-22190243155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k+r++Wt eL ++F+ea++++ G +k +Pk+ilelm+v+ Lt+e ++SHLQkYRl
  MLOC_12999.1 190 KTRVVWTIELQNKFLEAINKI-GLDKVVPKRILELMNVDYLTRESIASHLQKYRL 243
                   68*******************.********************************8 PP
2Response_reg73.96.1e-25151231109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+ + +++l+ +l++ +y + + ++d++ al++l++ +  +Dl+++D++mp+mdG++ll+ ir e  +lp+i+++   +++ + + +  Ga 
  MLOC_12999.1  15 VLAVDDDCVCLKVLEAILRRCKY-NPTMVTDAKTALKMLRAGKqeFDLVITDVRMPDMDGFKLLQLIRLEM-DLPVIMLSVDCDKKAVMKGITHGAC 109
                   799********************.9999***********877777**********************9976.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp++ +++ +
  MLOC_12999.1 110 DYLLKPVSTNDIKN 123
                   ********999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-1201544IPR017053Response regulator B-type, plant
SuperFamilySSF521727.54E-3311134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-3812136No hitNo description
SMARTSM004484.0E-2813125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.02614129IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-2215123IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.60E-2516128No hitNo description
PROSITE profilePS512949.91187246IPR017930Myb domain
SuperFamilySSF466896.72E-18187247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-24188248IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-24190244IPR006447Myb domain, plants
PfamPF002497.1E-6192242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAAMSEKKFP EGLRVLAVDD DCVCLKVLEA ILRRCKYNPT MVTDAKTALK MLRAGKQEFD  60
LVITDVRMPD MDGFKLLQLI RLEMDLPVIM LSVDCDKKAV MKGITHGACD YLLKPVSTND  120
IKNIWQHVEK RKNLEAISHI NNNNDHDYDI DDRVQPGTAA TRTDSENESN EGDGSNENEE  180
STHISITQKK TRVVWTIELQ NKFLEAINKI GLDKVVPKRI LELMNVDYLT RESIASHLQK  240
YRLQLKKVKS NPSGEAYERR KSSYNNMNNQ GSFMHNHEHE RWHMSSGLLS PNNFGATGHL  300
AQLANTHRNL CMGSLIHDGG MLKHVTPQLS VAGRFPGSID PPANLYNNIA SDTTLDEFAS  360
YSFCDSYADC MRGKLVETSK GKFSDPSYKS ATHATLPGVL HRDEIQMRSH VNIPRIPRAT  420
PSIQMPLQNE MVPPKMVKGA SNSTSLEGFS EQMASFNIAG NTRSVGMMLN ENSTPGNGRI  480
SMTQAHMVNS GSTISAVSNL HAENIGAMTH RLDGGDTVSI HPVQEGTVDQ YLYNDQVNEI  540
DDISLDDFFS DPLNADFTIA DDVMGGEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-21188248363ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12999.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198970.10.0two-component response regulator ORR24-like
TrEMBLA0A287XYS50.0A0A287XYS5_HORVV; Two-component response regulator
TrEMBLM0UQ140.0M0UQ14_HORVV; Two-component response regulator
STRINGMLOC_12999.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15285415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-76response regulator 10