PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12223.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 193aa    MW: 21303.7 Da    PI: 5.1065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12223.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183989155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  + ++GVr++  +grWvAeIr+p   + r +r++lg+f ta +Aa+ ++aa+++l+g
  MLOC_12223.1 39 CPFRGVRQRT-WGRWVAEIREP---N-RgARIWLGTFATALDAARTYDAAARALYG 89
                  679****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.6E-3040103IPR001471AP2/ERF domain
PROSITE profilePS5103220.314097IPR001471AP2/ERF domain
PRINTSPR003678.7E-94152IPR001471AP2/ERF domain
PfamPF008477.2E-124189IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-194197IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-274197IPR001471AP2/ERF domain
CDDcd000184.07E-274199No hitNo description
PRINTSPR003678.7E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEEVPAPVTE EQNKRRCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG RWVAEIREPN  60
RGARIWLGTF ATALDAARTY DAAARALYGD CARLNLATAP LPSMTAEVPL LHEQAQQPST  120
HGTNTNNTNV PCCSSSNSTP SLTTRTNSST LDSELSNYNM AGTSELEDFD EYVAGLPKPE  180
DYGLDGFEEV MDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-134196662ATERF1
3gcc_A1e-134196662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12223.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184362.11e-82LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA19e-64DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLM0UMA21e-141M0UMA2_HORVV; Uncharacterized protein
STRINGMLOC_12223.11e-142(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.17e-30ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]