PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_12054.6

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 139aa MW: 15918.1 Da PI: 7.2418

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_12054.6	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.5	5.7e-14	55	134	12	99
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++l +p +f +++ ++++ ++ l de+ ++++++ + k+++ l +GW++F+ ++L +gD++vF+l++r++f +v ++r+ MLOC_12054.6 55 TGSWLKIPVQFKRRYL--PPCDEMIFLVDEEDGEFQMRY--NAKGCG--LCTGWNSFAIGQKLADGDSLVFQLVQRTKF--KVYIIRA 134 44579*****9996..45999************..888877..888********************99999..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.22E-20	38	135	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.3E-19	38	135	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.49E-16	43	133	No hit	No description
PROSITE profile	PS50863	10.278	44	135	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-11	45	135	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-12	55	134	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
RSGCCTGWGL PQPPDRVYAT DEARDYAFSK AEELKNLLSS DHPSFIRPVT HLYATGSWLK 60 IPVQFKRRYL PPCDEMIFLV DEEDGEFQMR YNAKGCGLCT GWNSFAIGQK LADGDSLVFQ 120 LVQRTKFKVY IIRASSYYE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_12054.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175454.1	4e-61	B3 domain-containing protein Os06g0194400-like
Refseq	XP_020175455.1	4e-61	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	2e-47	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	M0ULJ8	1e-93	M0ULJ8_HORVV; Uncharacterized protein
STRING	MLOC_12054.1	2e-94	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-35	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]