PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_12054.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 219aa    MW: 25439.1 Da    PI: 9.7572
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_12054.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-131282071299
                   HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   + ++l +p +f +++   ++++ ++ l de+  ++++++  + k+++  l +GW++F+  ++L +gD++vF+l++r++f  +v ++r+
  MLOC_12054.3 128 TGSWLKIPVQFKRRYL--PPCDEMIFLVDEEDGEFQMRY--NAKGCG--LCTGWNSFAIGQKLADGDSLVFQLVQRTKF--KVYIIRA 207
                   44579*******9996..45999****************..888877..888**********************99999..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-20111208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-18111208IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-16116206No hitNo description
PROSITE profilePS5086310.278117208IPR003340B3 DNA binding domain
SMARTSM010191.1E-11118208IPR003340B3 DNA binding domain
PfamPF023626.8E-12129207IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAQPNSYEEQ RRRQVQENKR KLDELRLHRL SAAVHEAAVK PMPTKELKLR CIRAPPAPTR  60
RSGRVASLPD QPDYRERKAP RGLPQPPDRV YATDEARDYA FSKAEELKNL LSSDHPSFIR  120
PVTHLYATGS WLKIPVQFKR RYLPPCDEMI FLVDEEDGEF QMRYNAKGCG LCTGWNSFAI  180
GQKLADGDSL VFQLVQRTKF KVYIIRASSY YENEHCRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_12054.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743462e-40AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175454.11e-115B3 domain-containing protein Os06g0194400-like
RefseqXP_020175455.11e-115B3 domain-containing protein Os06g0194400-like
SwissprotQ69V362e-77Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM0ULJ81e-162M0ULJ8_HORVV; Uncharacterized protein
STRINGMLOC_12054.11e-163(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]