PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11286.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 431aa    MW: 48726.7 Da    PI: 5.3308
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11286.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.4e-34151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i+
  MLOC_11286.1  15 FLIKTYEMVEDPATSRVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDDFIRGHMHLLKNIH 102
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  MLOC_11286.1 103 RRKP 106
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-37799IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-6111104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEMEGGSQGA SPAPFLIKTY EMVEDPATSR VVSWGPGGAS FVVWNPPDFS RDLLPKYFKH  60
NNFSSFIRQL NTYGFRKIDP ERWEFANDDF IRGHMHLLKN IHRRKPVHSH SLQNQVNGPL  120
AESERREYED EISRLKHENS LLVAELQKQA HQQCGIGWLM QSLEDRLMVM EQRQTDVVSS  180
VRDILQRRRG AHHPGQQTML ELEPTDRFSK KRRVPKIDLF VEEQRVPYPR AIGDETPGMI  240
QVNAEPFEKM EMALVSLEKL VQRAAAATPT PSTDDPALGD LQAAPMEAGV NLELSPPNIR  300
HVHSPPELAV AESPGYAVQS PMLLFPDIQQ DKHKTMSEAD LSSEASTTDT SQDETTAETG  360
VPREPAVAAN DLFWERFLVD TPKPQCGYAF QESHESKDDV KIGIDCNWYG HRDNVDQITQ  420
QMGHLASAQK T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23610419129Heat shock factor protein 1
5d5v_B2e-23610419129Heat shock factor protein 1
5d5v_D2e-23610419129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_11286.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3623150.0AK362315.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004D11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168481.10.0heat stress transcription factor A-4d-like
SwissprotQ93VB51e-154HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLF2DEJ80.0F2DEJ8_HORVV; Predicted protein
STRINGMLOC_11286.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-70heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]