PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10017.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 265aa    MW: 29443.4 Da    PI: 10.0477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10017.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.7e-172271255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +++G+r+++ +g+W+AeIrdp     +  r++lg+f +aeeAa+a++  +++++g
  MLOC_10017.1 22 QFRGIRQRP-WGKWAAEIRDPI----KgFRVWLGTFNSAEEAARAYDVEARRIRG 71
                  69*******.**********72....359***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.3932279IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-222280IPR016177DNA-binding domain
CDDcd000181.49E-312279No hitNo description
SMARTSM003801.6E-352285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-312280IPR001471AP2/ERF domain
PRINTSPR003671.7E-102334IPR001471AP2/ERF domain
PfamPF008477.7E-102371IPR001471AP2/ERF domain
PRINTSPR003671.7E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSAGFHDRP AQRSAKRKRK NQFRGIRQRP WGKWAAEIRD PIKGFRVWLG TFNSAEEAAR  60
AYDVEARRIR GKKAKLNFPM EPTVPQKHHA PPVVPKVPKR STTKEHSFVP AINNLANKNA  120
SVYPSADFAS KHPLGQPGNM PFVPVMNSLA PVEAPVINMC SDRGSTSFGC SNLGWEYYTK  180
TPHISATAPI STIAEGDESL LVKGNTNNSV VPPVMENDAA NFEPWIRYLM DDTVDQLIDS  240
LFDVPRDVAA NFSKGTKPCI SEQRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-202280564ATERF1
3gcc_A2e-202280564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10017.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731860.0AK373186.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023D24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194339.11e-126ethylene-responsive transcription factor 1-like
SwissprotQ6K7E63e-98ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLF2EAL10.0F2EAL1_HORVV; Predicted protein
STRINGMLOC_10017.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.19e-34ERF family protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]