PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045775.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 304aa    MW: 33832 Da    PI: 5.3012
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045775.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.7e-36221122101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F+k++
  HL.SW.v1.0.G045775.1  22 FLTKTYQLVDDPAIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNEYFRKDE 101
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           k+ll++i+r+k
  HL.SW.v1.0.G045775.1 102 KRLLCEIQRRK 112
                           *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-3811106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-5618111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3519111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3222111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1704.6E-4153178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAVETNGESS AADSQKPLPT PFLTKTYQLV DDPAIDDVIS WNDDGSTFIV WNPTVFARDL  60
LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFSNEYFRKD EKRLLCEIQR RKIATTTPTV  120
AAIPTARPII SPSNSGEEQV ISSNSSSIVA PAELVDENER LRKENQQLTK ELAEMKTLCS  180
NIFSMVSNYA CVQSDSGFQA KEAGFREVKP LDLMPGKRFG GEVEEVVIGD GKTSPKLFGV  240
TLGNKRARAD GGDRAAAAAA EDEMDLRLQQ PAGVDVKSEP LDVDHQEKPW LKQCHRANQR  300
VCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-23711117129Heat shock factor protein 1
5d5v_B7e-23711117129Heat shock factor protein 1
5d5v_D7e-23711117129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107420.11e-171heat stress transcription factor B-2a
SwissprotQ9SCW41e-94HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2P5BPV90.0A0A2P5BPV9_PARAD; Heat shock transcription factor
STRINGXP_010107420.11e-171(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-87heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]