PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G044476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | EIL | ||||||||
Protein Properties | Length: 614aa MW: 69722.6 Da PI: 5.7016 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 526 | 1.5e-160 | 41 | 421 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 +el++rmw+d+mll+rlke++k k+ ++++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd HL.SW.v1.0.G044476.1 41 DELERRMWRDRMLLRRLKEQSKG----KQG-VDNAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASD 124 79********************8....566.8999****************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS EIN3 90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178 +LraWWkekv+fdrngpaai+kyqa++ i+++++++++ s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtG+e HL.SW.v1.0.G044476.1 125 NLRAWWKEKVRFDRNGPAAIAKYQAEHSIPGQNEDCSS-MASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPTGSE 212 ************************************77.99************************************************ PP HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX CS EIN3 179 lwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss 265 +ww++lg++kdqg+ppykkphdlkkawkvsvLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee+++++++++ ++ HL.SW.v1.0.G044476.1 213 EWWPQLGMPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARKLYPDrcPP 301 *************************************************************************************9766 PP XXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXX................................XXXXXXXXXXXXXXXXXXX CS EIN3 266 slrkqspkvtlsceqkedve.gkkeskikhvqavktta................................gfpvvrkrkkkpsesakvs 321 + +++ ++++s+ +++dv+ +++e++ +v+++k ++ + ++v+krk+ +e+++++ HL.SW.v1.0.G044476.1 302 MSASGNGSLVISETSDYDVDgVDDEPN-FEVEECKPRDvgrfnmgtivpsrdrmlmpqvaprikgeiietSPDFVQKRKQLGDEPQMMM 389 7788****************6666666.88999999999******************************9999******9999999999 PP XX......XXXXXXX.XXXXXXXXXXXXXXXXX CS EIN3 322 skevsrtcqssqfrgsetelifadknsisqney 354 ++++ +tc+ sq+++++++l+f d++s++++++ HL.SW.v1.0.G044476.1 390 DQKI-YTCEYSQCPYHDYRLGFLDRTSRNNHQM 421 9976.**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 6.9E-131 | 41 | 288 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 2.7E-76 | 161 | 298 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 5.36E-62 | 167 | 291 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MGFCGNFDFI SCPPREGEET LEHEPEATVE EDYSDEEMDV DELERRMWRD RMLLRRLKEQ 60 SKGKQGVDNA KQRQSQEQAR RKKMSRAQDG ILKYMLKMME VCKAQGFVYG IIPEKGKPVT 120 GASDNLRAWW KEKVRFDRNG PAAIAKYQAE HSIPGQNEDC SSMASTPHTL QELQDTTLGS 180 LLSALMQHCD PPQRRFPLEK GVAPPWWPTG SEEWWPQLGM PKDQGPPPYK KPHDLKKAWK 240 VSVLTAVIKH MSPDIAKIRK LVRQSKCLQD KMTAKESATW LAIINQEEAL ARKLYPDRCP 300 PMSASGNGSL VISETSDYDV DGVDDEPNFE VEECKPRDVG RFNMGTIVPS RDRMLMPQVA 360 PRIKGEIIET SPDFVQKRKQ LGDEPQMMMD QKIYTCEYSQ CPYHDYRLGF LDRTSRNNHQ 420 MNCAYRPNPS QASQQTFAMP SFQISNDKPA VFSLPFSQPK PAAASQQMNQ TSHFTGLDIP 480 EDGQKMISDL MSLYDSNAQQ RNKALNPGNH PAPTNMENHH QPQQKYQFQM DDSFFGQGVM 540 GGNMSEQANI SSQQAVYSSA EVQFDQCKAF DSPFDNNPND NIADLRFASP FNMAPVEFSV 600 DSLPKQDVSL WYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 3e-83 | 165 | 297 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 3e-83 | 165 | 297 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00367 | DAP | Transfer from AT3G20770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010106128.2 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2P5EMJ2 | 0.0 | A0A2P5EMJ2_TREOI; Ethylene-insensitive protein | ||||
STRING | XP_010106128.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF322 | 34 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |