PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044087.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 312aa    MW: 34431.9 Da    PI: 10.3975
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044087.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.74.1e-1560142186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W++  v  L+ea+++++   +r+klk+ +We+v++++     +++  ++++qCk+k+e+++kry+ + + + +       ++p++++l
  HL.SW.v1.0.G044087.1  60 EWSEGAVSSLLEAYENKWVLRNRAKLKGLDWEDVARYVssraNSTKSPKTQTQCKNKIESMKKRYRSESTADAS-------SWPLYSRL 141
                           5*************************************88777778889999**************99988876.......48988888 PP

              trihelix  86 e 86 
                           +
  HL.SW.v1.0.G044087.1 142 D 142
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.1E-1858142No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDKETNNHHH HHQESPSLLP NTTTAVAASA TAITVIPKEE SPRKPLSGGG GGGDRLKRDE  60
WSEGAVSSLL EAYENKWVLR NRAKLKGLDW EDVARYVSSR ANSTKSPKTQ TQCKNKIESM  120
KKRYRSESTA DASSWPLYSR LDLLLRGNGV PPTAAASAAV ADDTGGINKM LISDHASDKN  180
INNNSMDITS DSSTPALYSE KAEKIRSSSR KAGTAVNKIM KRKRKKKRKE ELEVAESIRW  240
LAEAVLKSEQ ARIEAMREIE RMRVEAEAKR AEMELKRTQI IANTQLEIAK LFASAVHVGK  300
AVDSSLRIGR N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219226MKRKRKKK
2220228KRKRKKKRK
3221225RKRKK
4221229RKRKKKRKE
5222228KRKKKRK
6223229RKKKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342812.11e-118trihelix transcription factor ASIL1-like
TrEMBLA0A2P5BX031e-152A0A2P5BX03_PARAD; Trihelix transcription factor
STRINGXP_009372813.11e-114(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-79sequence-specific DNA binding transcription factors