PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043767.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24693.2 Da    PI: 9.7115
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043767.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.2e-30959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+++fs++gkl eys+
  HL.SW.v1.0.G043767.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALLVFSTKGKLSEYST 59
                          79***********************************************96 PP
2K-box105.56.4e-35771743100
                 K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                           +++  s++ +++ s++ e+akLk++++ Lqr+q+h++Ge+L+sLs+keLq+LeqqL+++lk++Rs+Kn+l++e+i+elqkk k+lqe+n
  HL.SW.v1.0.G043767.1  77 ERQLLSNDPEQTGSWTLEHAKLKARMDVLQRNQKHFMGEELDSLSMKELQNLEQQLDSALKHVRSRKNQLMYESISELQKKDKALQEQN 165
                           5666667788999**************************************************************************** PP

                 K-box  92 kaLrkklee 100
                           + L+kk++e
  HL.SW.v1.0.G043767.1 166 NILTKKIKE 174
                           ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-38160IPR002100Transcription factor, MADS-box
CDDcd002654.35E-40279No hitNo description
SuperFamilySSF554559.81E-34291IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-2887172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.66188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGRVEMKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALLVFST KGKLSEYSTN  60
SSMERILERY ERYSYAERQL LSNDPEQTGS WTLEHAKLKA RMDVLQRNQK HFMGEELDSL  120
SMKELQNLEQ QLDSALKHVR SRKNQLMYES ISELQKKDKA LQEQNNILTK KIKEKEKEKA  180
QQALLEQQQV NHDVESSSNI LLPQSMQTLD IG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-20174173Myocyte-specific enhancer factor 2B
1tqe_Q2e-20174173Myocyte-specific enhancer factor 2B
1tqe_R2e-20174173Myocyte-specific enhancer factor 2B
1tqe_S2e-20174173Myocyte-specific enhancer factor 2B
6c9l_A2e-20174173Myocyte-specific enhancer factor 2B
6c9l_B2e-20174173Myocyte-specific enhancer factor 2B
6c9l_C2e-20174173Myocyte-specific enhancer factor 2B
6c9l_D2e-20174173Myocyte-specific enhancer factor 2B
6c9l_E2e-20174173Myocyte-specific enhancer factor 2B
6c9l_F2e-20174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024832.11e-123truncated transcription factor CAULIFLOWER A isoform X2
SwissprotQ6E6S71e-112AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2P5BCF11e-125A0A2P5BCF1_PARAD; MADS-box transcription factor
STRINGEOY221351e-117(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-92AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]