PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G042844.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Trihelix

Protein Properties

Length: 448aa MW: 51301.1 Da PI: 6.7958

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G042844.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.3	1.4e-25	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt+++v++Li+a+++++e+ + ++ +kk++W+ vsk+m+ergf++sp+qC++k+++lnkryk++++ +++ ++++++ HL.SW.v1.0.G042844.1 121 KWTDKMVKLLITAVSYIGEDAGPDCsgggrrkfaalQKKGKWKCVSKVMAERGFNVSPQQCEDKFNDLNKRYKRLNDVLGRGtSCQVVE 209 7*******************98888889999999********************************************6699999 PP trihelix 78 tcpyfdql 85 + +++d + HL.SW.v1.0.G042844.1 210 NPSLLDVI 217 99888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-22	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEGHLPHGGI IPGGASYGGL DLQGSIRPHH QGQHPHTIHQ QHNPHQCQTT NVRPSIHEGF 60 PLTMGTLHSC NQRMSMVDYN RAERNKNSAS DEDEPSFTEE GIDGHNEVSR GKKGSIWQRV 120 KWTDKMVKLL ITAVSYIGED AGPDCSGGGR RKFAALQKKG KWKCVSKVMA ERGFNVSPQQ 180 CEDKFNDLNK RYKRLNDVLG RGTSCQVVEN PSLLDVIDYL TEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ RSLQLALRTR DDNDNEDGRK HHHDDPDEED QEVETDDRDD 300 LEDNNASHGD RAMYGMLGDS GKRFRQGLGR EDVGFGNSLN PHDCNKSSYS QSQLAQADMN 360 QAPPDGTKVA WPQKQWVESR TLQLEERKIQ IQVEMLELEK QRLKWQRFSK KRDRELEKMR 420 MENERMKLEN ERLELELKRK EMGGGFT*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEGHLPHGGI IPGGASYGGL DLQGSIRPHH QGQHPHTIHQ QHNPHQCQTT NVRPSIHEGF  60
PLTMGTLHSC NQRMSMVDYN RAERNKNSAS DEDEPSFTEE GIDGHNEVSR GKKGSIWQRV  120
KWTDKMVKLL ITAVSYIGED AGPDCSGGGR RKFAALQKKG KWKCVSKVMA ERGFNVSPQQ  180
CEDKFNDLNK RYKRLNDVLG RGTSCQVVEN PSLLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RSLQLALRTR DDNDNEDGRK HHHDDPDEED QEVETDDRDD  300
LEDNNASHGD RAMYGMLGDS GKRFRQGLGR EDVGFGNSLN PHDCNKSSYS QSQLAQADMN  360
QAPPDGTKVA WPQKQWVESR TLQLEERKIQ IQVEMLELEK QRLKWQRFSK KRDRELEKMR  420
MENERMKLEN ERLELELKRK EMGGGFT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024164957.1	0.0	uncharacterized protein LOC112172033
TrEMBL	A0A2P5EBY0	0.0	A0A2P5EBY0_TREOI; Sequence-specific DNA binding transcription factor
STRING	XP_008237585.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-161	sequence-specific DNA binding transcription factors