PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G042534.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | Trihelix | ||||||||
Protein Properties | Length: 309aa MW: 35964.5 Da PI: 6.0552 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.1 | 6.6e-20 | 25 | 112 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt+qe+ +Li+a++e++ +l+rg lk +Weev+ + + + +++++qC++k+e+l++ry+++k++ + s +s +pyfd HL.SW.v1.0.G042534.1 25 WTHQETVHLIQAYEEKWYSLKRGPLKSSQWEEVAVTVaarcgyEYTEPSKTAIQCRHKMEKLRQRYRAEKNRLSV--S-GVSVWPYFDL 110 ***********************************998666666666689********************99997..3.4559*****9 PP trihelix 85 le 86 ++ HL.SW.v1.0.G042534.1 111 MN 112 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.4E-20 | 24 | 114 | No hit | No description |
PROSITE profile | PS50090 | 6.214 | 24 | 87 | IPR017877 | Myb-like domain |
SMART | SM00595 | 4.1E-6 | 32 | 119 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MAMATTPPPA AAASVSGKKP QPIPWTHQET VHLIQAYEEK WYSLKRGPLK SSQWEEVAVT 60 VAARCGYEYT EPSKTAIQCR HKMEKLRQRY RAEKNRLSVS GVSVWPYFDL MNRLERGPLP 120 ISARPMIALP YHRDRDREDG EDDEDEEEEN DSGDEGEDGD VIRTKSRSID HILKRPTTVN 180 RFAGEEERGR NVNGFSRVWA EPVTKRPRET VVEEEEYGED DLDGDEESNA KVEFLERRRR 240 RERKREVVLK LAAEIRAFSE RFVGMESMKM EIMKDTERCR REMETKRIEM ILHSQNKIVD 300 SITKAFRF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 241 | ERRRRRE |
2 | 237 | 245 | RRRRERKRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015892407.1 | 1e-107 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A2P5CIE1 | 1e-121 | A0A2P5CIE1_TREOI; Myb-like domain containing protein | ||||
STRING | XP_010110065.1 | 1e-88 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10087 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 7e-52 | Trihelix family protein |