PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040476.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23672.5 Da    PI: 10.5868
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040476.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-171150342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          i+n+s r+ tf kR++g+lKK +ELS+LC+++++ ii+s+
  HL.SW.v1.0.G040476.1 11 INNDSSRKATFKKRKKGLLKKVSELSTLCAVDACAIIYSP 50
                          99*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.6E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.297149IPR002100Transcription factor, MADS-box
CDDcd002668.51E-20285No hitNo description
SuperFamilySSF554557.98E-25294IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-9323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTRKKVKLAY INNDSSRKAT FKKRKKGLLK KVSELSTLCA VDACAIIYSP YEDQPAVFPS  60
TAGVNRILAR FKKMPEIEQS KKMVNQEAFL KQKIGKVNEQ VKKLRKENRE KEMNRLMYSN  120
LCGKTNLLGL TVTDLNDLTW LIDQNLKDIN KRIENVAKNT TSARMAAAAA TAPVVNGNFD  180
GEVKANVVAP MVNVDNNGVN GAVQRQQWRV D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYINNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022159723.19e-81agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-58AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2P5DR918e-87A0A2P5DR91_TREOI; MADS-box transcription factor
STRINGXP_009376202.15e-79(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-59AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]