PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039464.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GeBP
Protein Properties Length: 441aa    MW: 48112 Da    PI: 4.7702
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039464.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573117.48.2e-37143242197
                DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 
                           klfqrlw++eDei lLqG++d+++++gk   + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k+++gke+sf+++hdq
  HL.SW.v1.0.G039464.1 143 KLFQRLWTDEDEIGLLQGFLDYTTQRGKtthHGQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKISTGKEFSFKSPHDQ 231
                           579*************************5433345****************************************************** PP

                DUF573  87 kifelskkiWg 97 
                            +fe+s+kiW 
  HL.SW.v1.0.G039464.1 232 ATFEISRKIWS 242
                           **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-34145242IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MASHQDDVVL PGEEDLDSSS SQDEDEDDVV DDDEDDDDEE NDDVLADASS PPSASSTGTA  60
RFHVAVAVAP SSSNSVTVAL PAVTTNGEPI RLHHHHPPPP SSLATTVIAA ADPSAVSDRH  120
RNDVVLAVQP EEKKPAAFDD SRKLFQRLWT DEDEIGLLQG FLDYTTQRGK TTHHGQNDTA  180
LFYDQIKSKL QLDFNKNQLV EKLRRLKKKY RNVLNKISTG KEFSFKSPHD QATFEISRKI  240
WSDLGRIGPE DNALEDDDPN PNNPNFHIEV KAEDAGGFIV EKKTPTSRSR KRSRPKSAMA  300
ADDRRCMNDV SPPNKDNSYN HGGGGTTTNT TINNNGNVQG LIEETVKSCL SPLFKELLSS  360
AMAGSGPGPC AAARGFGGLA LNPIPLNFGG SSMNFGCGEV VDERWRKQQI LELEVYSKRL  420
DLVQDQIKTA LEDLRSRGGP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090273.11e-166probable transcription factor At5g28040
TrEMBLA0A2P5ENG80.0A0A2P5ENG8_TREOI; DNA-binding storekeeper protein-related transcriptional regulator
STRINGXP_010090273.11e-166(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-52DNA-binding storekeeper protein-related transcriptional regulator