PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G039215.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 296aa MW: 32595.2 Da PI: 10.5346 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.9 | 1.1e-29 | 224 | 282 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+y+WrKYGqK++kgs++pr+YY+C+s +Cp++k+ver+++d +++++tYe eH+h+ HL.SW.v1.0.G039215.1 224 QDEYSWRKYGQKQIKGSPYPRGYYKCSSVkDCPARKHVERARDDSNMLIVTYEWEHRHP 282 7**************************988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 7.3E-13 | 176 | 221 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-31 | 211 | 283 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.161 | 218 | 284 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.26E-25 | 221 | 283 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-33 | 223 | 283 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-25 | 224 | 282 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MAIDLIGFTK REDHMAVQEA ASAGLKSMEN LIRVLSSTNS SAIKNPAPGH LDFREATDFT 60 VARFKQVISI LNRTGHARFR RGPPSNPQPK TPKSDPIEIV PVKPSLSHET TRSEFSASQK 120 SKDCLTLSPP LSSNTSTSFM SSITGDDSVS NGKLGTLLFP PPVPVVSAGK PPLASRKRCH 180 DSVFSGDVTG KSSVSCHCHK RRKNRFKKSI RVPVISPKIA DIPQDEYSWR KYGQKQIKGS 240 PYPRGYYKCS SVKDCPARKH VERARDDSNM LIVTYEWEHR HPSTPVTGLA LQSTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-21 | 211 | 285 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024024319.1 | 1e-111 | probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 3e-94 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A2P5EMI2 | 1e-162 | A0A2P5EMI2_TREOI; WRKY domain containing protein | ||||
STRING | VIT_04s0069g00920.t01 | 1e-108 | (Vitis vinifera) | ||||
STRING | EMJ23400 | 1e-109 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 4e-90 | WRKY DNA-binding protein 11 |