PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039093.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28356.5 Da    PI: 10.4785
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039093.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.24.3e-181151343
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                          i+n+s r+ t+ kR++g++KK +ELS+LCd++++ ii+s+ 
  HL.SW.v1.0.G039093.1 11 INNESSRKATYKKRKKGLMKKVSELSTLCDVDACAIIYSPY 51
                          99*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.703149IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-23160IPR002100Transcription factor, MADS-box
CDDcd002662.24E-19285No hitNo description
SuperFamilySSF554551.44E-25294IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-11323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTRKKVKLAY INNESSRKAT YKKRKKGLMK KVSELSTLCD VDACAIIYSP YDTQPEVFPS  60
TAGVHRILTK FKKMPEIEQS KKMMNQEAFL KQKIGKVTEQ VKKLKKENRE KEMNRLMYAN  120
LSGKMNLQGL TVTDLNDLTW LIDQNLKDIN KRMEKIAKET KSARMAVAAA AATAPLSNGN  180
QNEEEKVNVA AAAAVNVDSN GAGAGAGGMQ RQQWRVDLNP QNQANNNSMR YGGRDVIFPF  240
GNNNNNWVNG HFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYINNESSRKATYKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874807.13e-90agamous-like MADS-box protein AGL80
SwissprotQ9FJK36e-60AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2P5D8I62e-98A0A2P5D8I6_PARAD; MADS-box transcription factor
STRINGVIT_14s0060g00300.t011e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-59AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]