PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G039080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 486aa MW: 53911.7 Da PI: 5.958 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 445.3 | 7.3e-137 | 208 | 424 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataksp 89 pppsaflgpkcalwdc+rpaqg +w+qdycssfha+lalneg+pg++pvlrp+gi+lkdgllfaalsak+qgk+vgipecegaataksp HL.SW.v1.0.G039080.1 208 PPPSAFLGPKCALWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMAPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSP 296 89*************************************************************************************** PP VOZ 90 wnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineld 178 wna+elfdls+legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp+++ ewhlyeyein++d HL.SW.v1.0.G039080.1 297 WNAPELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHIEWHLYEYEINKCD 385 ***************************************************************************************** PP VOZ 179 alalyrlelklvdekksakgkvskdsladlqkklgrlta 217 a+alyrlelkl+d+kk+ak+k+++ds+adlqk++grl+a HL.SW.v1.0.G039080.1 386 ACALYRLELKLADGKKNAKAKLTNDSVADLQKQMGRLSA 424 *************************************97 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 486 aa Download sequence Send to blast |
MMDKGSKSKC KSVTHKLFKD KAKNRVDDLQ AVFMDLQFAR KESRTIDMAV LEEQVNQMLR 60 EWKAELNEPS PASSLQQGGN PGSFSSDICR LLQLCEEEDD ATSPLAAPKP EPTDQTFQVG 120 ETVVFHEGFG MNQVQQEHGF PLVDCKNSTS RVCNVSVNNL EGATHLDYHQ FELHQEFGHN 180 FYTDFTGTCV SGEDALPHIS SYLPSICPPP SAFLGPKCAL WDCPRPAQGL DWCQDYCSSF 240 HAALALNEGP PGMAPVLRPG GIGLKDGLLF AALSAKAQGK DVGIPECEGA ATAKSPWNAP 300 ELFDLSVLEG ETIREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMNEFGGLKR 360 SYYMDPQPLN HIEWHLYEYE INKCDACALY RLELKLADGK KNAKAKLTND SVADLQKQMG 420 RLSAEFPSPE SKRSVKGRSK LTAKVGVGNV YSTTNRVPST NGTFGYGLGA PYDYLVDNMS 480 EYYLT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111154.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_024031048.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_024031049.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2P5C7R2 | 0.0 | A0A2P5C7R2_TREOI; VOZ1 transcription factor | ||||
STRING | XP_010111154.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|