PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038552.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARF
Protein Properties Length: 643aa    MW: 72395.5 Da    PI: 8.6169
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038552.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.6e-13791681399
                           TT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                    B3  13 sgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                              + +p++ ae++       ++++++  +l+ +d++ ++W + +i  ++++ ++lt+GW+ Fv  ++L + D+++F   ++++++l++
  HL.SW.v1.0.G038552.1  79 DTSIHVPRRAAEKIfppldfsMQSPAQ--ELVARDLHDKVWIFHHICLGQPKCHFLTAGWSLFVIRKKLVDDDSILFI--RDEKQHLRL 163
                           334679*************96444444..8************************************************..5689999** PP

                           EEE-S CS
                    B3  95 kvfrk 99 
                           +++r+
  HL.SW.v1.0.G038552.1 164 GIRRA 168
                           *9997 PP
2Auxin_resp104.99.7e-35193276183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+++ +F+v+YnPr s+seFv++++k+ ka+  +++s+Gm f+m+fe e s++++++Gt++g+sdldp rW+nS+Wr+L+
  HL.SW.v1.0.G038552.1 193 AAHAAANNRPFTVFYNPRYSPSEFVIPLAKYYKAVCrNQISLGMHFQMMFEIEKSRTTSFMGTITGISDLDPARWKNSQWRNLQ 276
                           79******************************998669********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-2559196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-2764181IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.83967169IPR003340B3 DNA binding domain
CDDcd100172.32E-1170167No hitNo description
SMARTSM010197.4E-1171169IPR003340B3 DNA binding domain
PfamPF023621.1E-1081168IPR003340B3 DNA binding domain
PfamPF065074.8E-30193276IPR010525Auxin response factor
PROSITE profilePS5105012.552462521IPR011124Zinc finger, CW-type
PfamPF074961.5E-11468518IPR011124Zinc finger, CW-type
Gene3DG3DSA:3.30.890.103.0E-7500559IPR001739Methyl-CpG DNA binding
SuperFamilySSF541712.19E-5506554IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MKKDVYAQMS NYPNLPSKLL CLLQSVSLHA DPETDEVYAQ MTLQPVQTVD KEALLRSDFA  60
LKTNKPQPEF FCKTLATTDT SIHVPRRAAE KIFPPLDFSM QSPAQELVAR DLHDKVWIFH  120
HICLGQPKCH FLTAGWSLFV IRKKLVDDDS ILFIRDEKQH LRLGIRRANR QPTNLSSSAL  180
SSGSMHIETL AAAAHAAANN RPFTVFYNPR YSPSEFVIPL AKYYKAVCRN QISLGMHFQM  240
MFEIEKSRTT SFMGTITGIS DLDPARWKNS QWRNLQVGWC DKSRERHNRV SIWEIEPVPF  300
LIRSRPFFRP KRPRQASMPD VGIVMKGNQG SPDLSLAQWL NMAHNPALTC STQPNYMQNL  360
PGADIFQQLG LSAPQTNQAN NLQFGSQRLP QQAQQHDQLP NLPSTINSPG SVMQTQPQQQ  420
MSDVVVNQAC SGSSTPVPEP SPYQPQKYQT CFGSPNQPST VLPSVGAFTV QCAACFKWRL  480
IPTKEKYEEF REHILEQPFF CETAREWRPD ISCDDPADVN QDGSMLWVID KPNIAQSPPG  540
WQRLLQIRGE GSAKFAADVL CGTIRKETLF NGGHPKVFIG TFRAHKRWSD IVAIFVSNPN  600
AAVGKSYKGS PYSFTVNPLA WAGSDDFTYL QLVPPSIYDH VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-111229689388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820293.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W31e-147ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2P5E7030.0A0A2P5E703_TREOI; Auxin response factor
STRINGXP_010106948.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-126auxin response factor 19