PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G038201.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 670aa MW: 77152.4 Da PI: 5.2383

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G038201.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.4	2.1e-22	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH ++ HL.SW.v1.0.G038201.1 60 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSDAN-----RPRPETRTGCPAMIKFRLMDTKRWRIIEVELEHNHLIS 142 9*************99997.66779***********9988.....*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-19	60	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-29	263	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.914	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.5E-6	559	586	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	4.4E-5	561	581	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MDEVSLNTEP VGDDDGDELE IEGDCGMTEY VSQGGISEGE NPLPPSVGME FDSYEDVYYF 60 YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SDANRPRPET RTGCPAMIKF 120 RLMDTKRWRI IEVELEHNHL ISPASGKFYK SHKNIGVGTK RVLQLDGPEE TQKIKQFRTV 180 IVDAEVNGSI DVDEEESGRS IDHSNQLKLE AGDSQAVQNF FCRSQLVDPN FFYVVDLNEK 240 GCLRNLFWAN ARTRVTYSYF GDVVCIDTTC LTNKYEVPLV SFIGVNHHGQ SVLLGCGLLA 300 GETIESYTWL FRAWLTCMSG RPPQVIISDQ NDTLQTAVAD VFPRATQCLC LSRIMQKVPE 360 KLGSFFEYDA INAALNRAVY YSQRPEEFEA AWEDMIQLHG IRDQKWLQSL YEDRKRWVPA 420 FFKDVFLAGM FPIQPNEVVS SFFEEHLDRN TPLKQFLDKY DLALQKHYQL EALADLDSKN 480 PTSKTRYSFE MQLSRLYTNG ILRKFEREVE GMYSCFCSRQ SNSDGPIMTY VVKEQIEVDG 540 NVREARDYEV LFNPPEMEVI CICGMFNFKG YLCRHALWVL SQNGMEEIPV QYIVSRWRKD 600 VKRKYVISSI CSDSGIDVNN PIHRYDHLYK CIVQVVEEGR KSQERYKVSV QALEEILNKL 660 RLTEEDHLV*

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MDEVSLNTEP VGDDDGDELE IEGDCGMTEY VSQGGISEGE NPLPPSVGME FDSYEDVYYF  60
YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SDANRPRPET RTGCPAMIKF  120
RLMDTKRWRI IEVELEHNHL ISPASGKFYK SHKNIGVGTK RVLQLDGPEE TQKIKQFRTV  180
IVDAEVNGSI DVDEEESGRS IDHSNQLKLE AGDSQAVQNF FCRSQLVDPN FFYVVDLNEK  240
GCLRNLFWAN ARTRVTYSYF GDVVCIDTTC LTNKYEVPLV SFIGVNHHGQ SVLLGCGLLA  300
GETIESYTWL FRAWLTCMSG RPPQVIISDQ NDTLQTAVAD VFPRATQCLC LSRIMQKVPE  360
KLGSFFEYDA INAALNRAVY YSQRPEEFEA AWEDMIQLHG IRDQKWLQSL YEDRKRWVPA  420
FFKDVFLAGM FPIQPNEVVS SFFEEHLDRN TPLKQFLDKY DLALQKHYQL EALADLDSKN  480
PTSKTRYSFE MQLSRLYTNG ILRKFEREVE GMYSCFCSRQ SNSDGPIMTY VVKEQIEVDG  540
NVREARDYEV LFNPPEMEVI CICGMFNFKG YLCRHALWVL SQNGMEEIPV QYIVSRWRKD  600
VKRKYVISSI CSDSGIDVNN PIHRYDHLYK CIVQVVEEGR KSQERYKVSV QALEEILNKL  660
RLTEEDHLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097195.2	0.0	uncharacterized protein LOC21408426
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	W9RSB4	0.0	W9RSB4_9ROSA; Protein FAR1-RELATED SEQUENCE 6
STRING	XP_010097197.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]