PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G038008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 194aa MW: 21798.4 Da PI: 9.8733 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.3e-30 | 114 | 172 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++ +prsYYrC++++C+vkk+++r ++d ++v++tY g Hnh+ HL.SW.v1.0.G038008.1 114 LDDGYRWRKYGQKTVKNNSHPRSYYRCSHHTCNVKKQIQRLSKDSRTVVTTYDGIHNHP 172 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-31 | 101 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-27 | 106 | 173 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.725 | 109 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.7E-35 | 114 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 115 | 172 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MIPLLSGFPN TIPNPNPNPN PFPSTSSTVL LEDQSQLSSE VVLNWFGLLC GSTNIDNNYN 60 NHQKPLSSPN YNDQSVKGNG SEGEKINNKA KIGRKKKAAP QRIAFHTRSD DDVLDDGYRW 120 RKYGQKTVKN NSHPRSYYRC SHHTCNVKKQ IQRLSKDSRT VVTTYDGIHN HPCHKLLETL 180 GPLLNQLQFL STI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-23 | 104 | 171 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-23 | 104 | 171 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896460.1 | 6e-62 | probable WRKY transcription factor 24 | ||||
Swissprot | Q8VWQ4 | 3e-56 | WRK56_ARATH; Probable WRKY transcription factor 56 | ||||
TrEMBL | A0A2P5ATP4 | 8e-82 | A0A2P5ATP4_PARAD; WRKY domain containing protein | ||||
STRING | XP_010053205.1 | 2e-60 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 2e-58 | WRKY DNA-binding protein 56 |