PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036068.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family FAR1
Protein Properties Length: 748aa    MW: 86549.2 Da    PI: 7.9925
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036068.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.91.1e-2029103189
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn YA++vGF++r+ + ++s++ng++ +r+fvCskeg++ +              +rtgC a +kv+++++gkw+v+ + ++HnH+l
  HL.SW.v1.0.G036068.1  29 EFYNLYARRVGFKIRTGQLYRSRTNGTVSSRRFVCSKEGFQLN--------------SRTGCPALIKVQRRDSGKWVVDLFLKDHNHDL 103
                           6***************************************876..............589***************************98 PP
2FAR1644.2e-20184258189
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fY++YA + GFs+r+ +  +sk +g+it+r+fvCskeg+++++              r gC a +++k+ ++g+w+v++l++ HnHel
  HL.SW.v1.0.G036068.1 184 QFYQAYAASKGFSIRIGQLFRSKLDGSITSRRFVCSKEGFQHPS--------------RLGCGAFMRIKRLESGRWVVDRLQKGHNHEL 258
                           6***************************************9994..............789***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1629103IPR004330FAR1 DNA binding domain
PfamPF031016.4E-16184258IPR004330FAR1 DNA binding domain
PfamPF105511.9E-26359451IPR018289MULE transposase domain
PROSITE profilePS5096610.497631669IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-7632666IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6644671IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MNDVIEDEGE SRLEPYVGLE FDSADEAREF YNLYARRVGF KIRTGQLYRS RTNGTVSSRR  60
FVCSKEGFQL NSRTGCPALI KVQRRDSGKW VVDLFLKDHN HDLGLAGESP PPPLLLQKTP  120
LAAKSVVTVS HRPRTKLIEE VEDGRPSPSG IINIKRLKRD GEELQSKVEP FSGLEFNSAN  180
EAYQFYQAYA ASKGFSIRIG QLFRSKLDGS ITSRRFVCSK EGFQHPSRLG CGAFMRIKRL  240
ESGRWVVDRL QKGHNHELEL QLELHKKSVT ASKRLLEEES GGLENEDIFN ISTANIVKRS  300
RENHIGSDWY RVLLEYFQTR QAEDTSFFYA VEVDNGSCMS IFWADGRSRF SASQFGDAII  360
LDTSYRKSIY LVPFATFIGI NHHKQPVLLA CALIADESEE AFTWLFQTWL RAVSGLHPLS  420
IIADQDKAIQ HSIKKVFPNT HHRFSLWQLK AKEREYLNLM EGSLRYEYEK CIYQSETVDE  480
FEASWTMLLS RFGLIENAWL KEMYEKRESW VPAYLRSTFF AGITLNDNVE SFFGTFLNAQ  540
TPLVEFVSRY ERGVERRREE ERKEDFNSYN LQVLLQTKEP VEEQCRRLYT LSVFKIFQKE  600
LLQSYGYLGF KIYEEGALSR YLVRKGGNDN EKCVVTFSAS NLNVSCSCEM FEFEGVLCRH  660
ILRVFQILDV REIPSRYILH RWTRNAEYGT LHDFESARSS QELKALMVWS LRETASKYVE  720
AGAASFEKHK LAYEIMREGG RKLCWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027512.10.0protein FAR1-RELATED SEQUENCE 7 isoform X3
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLW9RS140.0W9RS14_9ROSA; Protein FAR1-RELATED SEQUENCE 7
STRINGXP_010105698.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]