PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034794.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 372aa    MW: 41201.6 Da    PI: 7.4986
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034794.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29215274159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp+++++tYegeH h+
  HL.SW.v1.0.G034794.1 215 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApNCPVKKKVQRSAEDPSLLVVTYEGEHCHS 274
                           58***************************99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-29208275IPR003657WRKY domain
PROSITE profilePS5081125.304210276IPR003657WRKY domain
SuperFamilySSF1182901.83E-25211275IPR003657WRKY domain
SMARTSM007746.2E-35215275IPR003657WRKY domain
PfamPF031061.8E-24216273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MESTWPKNSL DLNLNSFQHV IEVPEKELER DHSINFEGKF SVREVGTGDG DVDKNVLLTE  60
ELHRMSSENK KLTEMLSIVW KNYNNLQTKV RELMMTKNAG VSHAHGQNEL ASLTPRKRKA  120
GEEYSNVVNG LMSNMECCSS DEEYSYCRLP KEIKSKNAEV SHGQNELASL TPRKRKAGEE  180
YSNVVSGLIS NIMECCSSDE EYSCRLPKEI KSKLVKDGYQ WRKYGQKVTR DNPSPRAYFK  240
CSFAPNCPVK KKVQRSAEDP SLLVVTYEGE HCHSHISSSQ PSALMLPAIS ASMRSLPSTV  300
TLDLVRPAAA AAAGSTDSPR MAPLQGIDSP VLHQFLVQQM ASSLTRDPNF TAALATAISG  360
NLLDNTRVEK G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-192142731674Probable WRKY transcription factor 4
2lex_A2e-192142731674Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840201e-36GU984020.1 Cucumis sativus WRKY protein (WRKY21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024024355.15e-91probable WRKY transcription factor 40 isoform X2
TrEMBLA0A2P5DMR21e-127A0A2P5DMR2_PARAD; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.12e-58WRKY DNA-binding protein 18