PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034454.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 519aa    MW: 58248.4 Da    PI: 8.0889
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034454.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.75e-33247304259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  HL.SW.v1.0.G034454.1 247 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHH 304
                           8********************************************************7 PP
2WRKY58.51.3e-183684131459
                           --TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  14 evkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +++g + + sYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  HL.SW.v1.0.G034454.1 368 HIQGEPSSISYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHH 413
                           6999*****************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-34231306IPR003657WRKY domain
SuperFamilySSF1182907.19E-29239306IPR003657WRKY domain
PROSITE profilePS5081132.053241306IPR003657WRKY domain
SMARTSM007748.6E-39246305IPR003657WRKY domain
PfamPF031068.9E-26247304IPR003657WRKY domain
PfamPF031067.8E-14367413IPR003657WRKY domain
SuperFamilySSF1182902.88E-13367415IPR003657WRKY domain
SMARTSM007741.5E-11368414IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-16368415IPR003657WRKY domain
PROSITE profilePS5081119.451369415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSDAQESNDH HHRDPYRPYD PFNYEIDGRS CSLFPFLSSN NNNNTSSIMY NNHSTAPVVQ  60
PQQNVQSITM TSSLLDPAMN SYLMSYTDCL HGGSMDQYNN LSRAFDISCA ASSSDVVSQI  120
VDNYHNNHDI DSSTNNNNHL GTNPIKAAAA DQSAGNSENP STPNSSISAT SSNDAAATVA  180
AEEDSGKSKK EDEEMTMMII IISLIKGLTT KIRHQKKRRS SKTKKKEKRP REPRFAFLTK  240
SEIDHLEDGY RWRKYGQKAV KNSPYPRSYY RCTTQKCTVK KRVERSFQDP SIVITTYEGQ  300
HNHHCPATLR GNAAAMLSPS FLASAASVGT APHLPHDFFT QFLPITNNSN IHQHQHQHQH  360
LHHHLNNHIQ GEPSSISYYR CTTQKCTVKK RVERSFQDPS IVITTYEGQH NHHCPASLRG  420
NAAAMLSPSF LASAASVGTA PHLPHDFFTQ FLPITNNSNI NQHQHLHHHL NNHIQGEPSS  480
MLYSNLTHQY HQQLHQVPDF GLLQDLVPSF SRHNKQDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-272393071078Probable WRKY transcription factor 4
2lex_A8e-272393071078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216228KRRSSKTKKKEKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102144.11e-103probable WRKY transcription factor 71 isoform X1
RefseqXP_024025113.11e-103probable WRKY transcription factor 71 isoform X2
TrEMBLA0A2P5DIE91e-151A0A2P5DIE9_TREOI; WRKY domain containing protein
STRINGXP_010102144.11e-102(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-47WRKY DNA-binding protein 71