PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G034044.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 336aa MW: 37427.8 Da PI: 8.5385

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G034044.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.6	3.4e-25	2	71	64	128
NAM 64 rdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 rd+ky++g r+nra++sgyWkatg+dk+++++ +++++g+kk Lvfykgr pkg+kt+W+mheyrl HL.SW.v1.0.G034044.1 2 RDRKYPNGARPNRAAASGYWKATGTDKTIVTSsmggpHHQNIGVKKALVFYKGRPPKGVKTNWIMHEYRL 71 79**************************99999998999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-30	1	112	IPR003441	NAC domain
PROSITE profile	PS51005	34.828	1	112	IPR003441	NAC domain
Pfam	PF02365	1.3E-10	12	71	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
PRDRKYPNGA RPNRAAASGY WKATGTDKTI VTSSMGGPHH QNIGVKKALV FYKGRPPKGV 60 KTNWIMHEYR LAESPAYAYN SNLNKLNNNN NNKLKDSSMR LDDWVLCRIY KKTNVVHPTA 120 ATTAIPSDQE EEEQFVQETL LSSSPPCLLK LDQENSIDNS SSIIKPQKSC SFSNLLDTMD 180 YSLLSSLLAD CPSNNSTGFD HYSSISSSTG FNTSSSTILD QQQPFFFNGC SSGGSSNTTN 240 MIGSGNYMVQ QPSYNKLPQL QQLPLPPPTS VENHRLKRQR SSSDDQLQCP PKKCMINSCN 300 FLNTTTTTSN IQSDNYMNQL FLNQHLFLSP ELQFHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-36	1	112	78	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-36	1	112	78	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-36	1	112	78	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-36	1	112	78	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-36	1	112	81	168	NAC domain-containing protein 19
3swm_B	3e-36	1	112	81	168	NAC domain-containing protein 19
3swm_C	3e-36	1	112	81	168	NAC domain-containing protein 19
3swm_D	3e-36	1	112	81	168	NAC domain-containing protein 19
3swp_A	3e-36	1	112	81	168	NAC domain-containing protein 19
3swp_B	3e-36	1	112	81	168	NAC domain-containing protein 19
3swp_C	3e-36	1	112	81	168	NAC domain-containing protein 19
3swp_D	3e-36	1	112	81	168	NAC domain-containing protein 19
4dul_A	2e-36	1	112	78	165	NAC domain-containing protein 19
4dul_B	2e-36	1	112	78	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010088481.1	1e-120	NAC transcription factor 47
TrEMBL	A0A2P5AK11	1e-129	A0A2P5AK11_PARAD; NAC domain containing protein
STRING	XP_010088481.1	1e-119	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	3e-54	NAC domain containing protein 47