PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034009.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 570aa    MW: 62845.5 Da    PI: 4.6645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034009.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.12.6e-3081271128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +p+G+ F+Ptd+e++++yL+ k+ g + e++ +i+ev+i++++Pw+Lp k k+k++++ew+f s++  ++++++rk r+t++g Wk tg
  HL.SW.v1.0.G034009.1   8 VPVGLTFSPTDQEVIDYYLRLKLLGMDSEVDPCIAEVNILDFDPWELPaKsKLKSNNNEWWFSSRSFYRTSSSDRKGRKTETGSWKITG 96 
                           589***************************888**************95357788888***99999999999***************** PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k k++ s     vg k  L+fy     kg ktdW+m+ey++
  HL.SW.v1.0.G034009.1  97 KRKKIGS-----VGEKAYLTFY-----KGGKTDWTMQEYSI 127
                           *****98.....9*********.....6889********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-326146IPR003441NAC domain
PROSITE profilePS5100529.9858148IPR003441NAC domain
PfamPF023652.1E-169127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MSSNPSVVPV GLTFSPTDQE VIDYYLRLKL LGMDSEVDPC IAEVNILDFD PWELPAKSKL  60
KSNNNEWWFS SRSFYRTSSS DRKGRKTETG SWKITGKRKK IGSVGEKAYL TFYKGGKTDW  120
TMQEYSIPVH NNHLHQKYTN VICCLRLKTD NKGRKANKQK SARVISHSKK KGRKANATCW  180
EEGETSGDNI TPDLENPVAS AVTTLVHGHD EVNHQQFSPM LLPGSTFIEH ALSLMLDYEM  240
LVASGENGEV SGKTTSDLVL ENPSASTDIS PLVQCDDEVS CQLSSQIYSP DFSEQMLSSL  300
LDNAIQAPSG IDGELSGQIF SDFAHMLGNE KLVPSGENGA ISGQTSSDIE NQLAHAVTSP  360
LLHCPDEASS QLFSPDSSFK GKTLSFISDN DMHVPSGAYG ELRGISTSDL ENPLASAVVS  420
SSLQCDDDAS CQLVSHIYSP DSSKQMLSSL LDYKIQAPSG TDGELSGQSS SDFDNQVAFV  480
AHCDDEMNHH LSWPMYSPDV SNEYYVKFAD PFVDDREEND NRTTTGLFST YRTSSKRPYV  540
YFDGQFMGEA HTEEVNERAK RCVYWPLDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-18812715140Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1850024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.13e-24NAC domain containing protein 4