PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033132.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 345aa    MW: 40231 Da    PI: 8.8299
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033132.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-1782176199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr. 87 
                           ffkv+    +++s+ +++p  f+ ++++  + ++ + ++de+g+ W++ +  rk++++ y++++ W+ Fvk+++L+ gDf++Fk++++ 
  HL.SW.v1.0.G033132.1  82 FFKVF--MPTFSSKSMWIPPAFVGKFMK--RIPRVVNVRDENGKCWSIGV--RKTKEKvYFISRQWQVFVKEHKLELGDFLLFKYTSNy 164
                           89999..557777779*******99984..58889***************..9998888****************************99 PP

                           SEE..EEEEE-S CS
                    B3  88 sefelvvkvfrk 99 
                           s++++ vk++ k
  HL.SW.v1.0.G033132.1 165 SNASFQVKIYAK 176
                           ***999999865 PP
2B334.34.1e-11250325585
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                           lt+ +  +++ +++p+  ++ + ++    k+++l+ ++++ W+v  +++k +++++ +  W+eF+k ++L+ +D ++F+++
  HL.SW.v1.0.G033132.1 250 LTTLSRESLQKVRIPRAVLSGIRLE----KEIVLRCQNNELWRVGTTFNKDGQAFIWR-KWSEFCKGKNLRNNDKCLFEMI 325
                           6778888999999****99877765....58***************999998887555.9******************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2176179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2176179IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-1680174No hitNo description
PROSITE profilePS5086312.98580177IPR003340B3 DNA binding domain
PfamPF023628.1E-1682176IPR003340B3 DNA binding domain
SMARTSM010192.0E-1182177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-12244339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-12245344IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.248246342IPR003340B3 DNA binding domain
SMARTSM010190.0022249332IPR003340B3 DNA binding domain
PfamPF023622.6E-9250325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MERFDSEKSC VYLCIRSLLL QLSHPLVLTP FSVFCFLTHF LSNQTDRDPS MNFKRRSSKM  60
EKLGNFPNLE EVDDDDDDGP EFFKVFMPTF SSKSMWIPPA FVGKFMKRIP RVVNVRDENG  120
KCWSIGVRKT KEKVYFISRQ WQVFVKEHKL ELGDFLLFKY TSNYSNASFQ VKIYAKNGCK  180
KEHKPLHHHH HNSTTPANLQ IIPVHQPGSF SEHNEDTKPT DEELERVGEN YSNGDDDVVQ  240
HGTTHHRHFL TTLSRESLQK VRIPRAVLSG IRLEKEIVLR CQNNELWRVG TTFNKDGQAF  300
IWRKWSEFCK GKNLRNNDKC LFEMIIFAQS NTCKEMKVFV IPGC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-29B3 family protein