PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G032502.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

WOX

Protein Properties

Length: 375aa MW: 42655.6 Da PI: 7.5582

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032502.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66	5.2e-21	101	161	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t+eql +Leel++ +r+p+a++++e+++ l +++ ++V++WFqN++a++k+ HL.SW.v1.0.G032502.1 101 SSRWTPTPEQLLVLEELYQHgKRTPTAQQIQEITSMLrrfgKIEGKNVFYWFQNHKARDKR 161 58***************99************************************97 PP
2	Wus_type_Homeobox	111.8	3.7e-36	100	163	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RWtPtpeQ+ +Leely++G rtP++++iq+it++L+++Gkie+kNVfyWFQN+kaR+++k+ HL.SW.v1.0.G032502.1 100 QSSRWTPTPEQLLVLEELYQHGKRTPTAQQIQEITSMLRRFGKIEGKNVFYWFQNHKARDKRKR 163 589***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.564	97	162	IPR001356	Homeobox domain
SMART	SM00389	1.7E-8	99	166	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.85E-13	100	165	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-18	102	161	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.9E-10	102	162	IPR009057	Homeodomain-like
CDD	cd00086	4.61E-4	103	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGCRDGNEIT KVHTSLKDIN LQVITSSTFS PKNTTYCTSL PNSYYHTTTS TPLINHYPDY 60 SSITTTDIKY KLGPHHHHQH HHHHHQNNIT LRSQVGVPMQ SSRWTPTPEQ LLVLEELYQH 120 GKRTPTAQQI QEITSMLRRF GKIEGKNVFY WFQNHKARDK RKRRKLLEAA ARSHKHLLAT 180 PPELSSGSRV TGLGVEQTKQ ESFPYITRIS EEFASVPRVA IEEGCSNTLA QLEEKELGLI 240 IKSNNNNSEE SYATWNPMEV SYSFPDNFVL NWARPTVTSF TLEGKPLDKT QQESNFSLTS 300 NNRANEKDGI KESIETLELF PLRSDNVKGS PCTEHTKITS YRGEDSDFNE ELSLSFISSL 360 NEFSKEVGHV VVRP*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGCRDGNEIT KVHTSLKDIN LQVITSSTFS PKNTTYCTSL PNSYYHTTTS TPLINHYPDY  60
SSITTTDIKY KLGPHHHHQH HHHHHQNNIT LRSQVGVPMQ SSRWTPTPEQ LLVLEELYQH  120
GKRTPTAQQI QEITSMLRRF GKIEGKNVFY WFQNHKARDK RKRRKLLEAA ARSHKHLLAT  180
PPELSSGSRV TGLGVEQTKQ ESFPYITRIS EEFASVPRVA IEEGCSNTLA QLEEKELGLI  240
IKSNNNNSEE SYATWNPMEV SYSFPDNFVL NWARPTVTSF TLEGKPLDKT QQESNFSLTS  300
NNRANEKDGI KESIETLELF PLRSDNVKGS PCTEHTKITS YRGEDSDFNE ELSLSFISSL  360
NEFSKEVGHV VVRP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	165	DKRKRRKL
2	159	164	KRKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5FK24	1e-120	A0A2P5FK24_TREOI; Homeodomain transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10632	29	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	1e-24	WUSCHEL related homeobox 1