PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G031934.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 471aa MW: 51579.5 Da PI: 8.6066 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96 | 2.6e-30 | 286 | 344 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+ HL.SW.v1.0.G031934.1 286 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRTDPGMFIVTYTAEHNHP 344 79*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-30 | 275 | 346 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.808 | 280 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-25 | 283 | 346 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-36 | 285 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-25 | 287 | 344 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 471 aa Download sequence Send to blast |
MPTPPISLSK KAHLCLSLSF SQLFFFYLFI FCVNLLFLSI YTCCYILFLS HSFASLSFSF 60 IKSQRLLLSF SLSLSVLRAR ARDNTGYRAC RSTTMEVDWD LQAVVRGCST AGAGVRASTT 120 TTATSTTSSP VFMADFQTTA ASSSSFLFSS SSSPFGSTSC NSSSISEHQS SGQLFLLPDP 180 NSMRPRNFVV EELHELYKPF FPKSHTQIQT PLSSLSSICS STSTSTTIRS NDQIRQVKQV 240 HHQHQHQHQP TTKQSHNNGS TTTPRSKKRK NQVKKVCQVP AESLSSDIWA WRKYGQKPIK 300 GSPYPRGYYR CSSSKGCLAR KQVERNRTDP GMFIVTYTAE HNHPAPTHRN SLAGSTRQKP 360 STPQSISGTS DFNNPATKTS SPATSGEEEV FVPQTHSTTT ESKDGPESVL MDDDDEDEFG 420 LSDVAMSDDF FVGLEGLGSP TTGEFFSDNF PTSFSLPWVA NSAATAAGGR * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-23 | 270 | 347 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 5e-23 | 270 | 347 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092573.1 | 1e-149 | WRKY transcription factor 22 | ||||
TrEMBL | A0A2P5F036 | 1e-167 | A0A2P5F036_TREOI; WRKY domain containing protein | ||||
STRING | XP_010092573.1 | 1e-148 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01250.1 | 8e-78 | WRKY family protein |