PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G031294.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 665aa    MW: 72490.5 Da    PI: 5.3755
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G031294.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.11.9e-1282716121356
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           lv++L++cAeav++++l+ a+al+++++ la +++ +m+++a++f++ALa+r++r    ly    p++  +++ se l++   f+e++P
  HL.SW.v1.0.G031294.1 271 LVHALMACAEAVQQNNLNIADALVKQINYLAMSQAGAMRKVATFFAQALARRIFR----LY----PENPLDHSLSEFLQM--HFYETCP 349
                           689****************************************************....44....444443446666555..5****** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +lkf+h+taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe+
  HL.SW.v1.0.G031294.1 350 YLKFAHFTANQAILEAFQGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLAQLAETIHVEFEY 438
                           ***************************************************************************************** PP

                  GRAS 179 nvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           + +va++l+dl+ ++L+++p   Ea+aVn+v++lh+ll++++++e+    vL++vk+++P++v++veqea+hn++ F++rf+eal+yys
  HL.SW.v1.0.G031294.1 439 RGFVANSLADLDASMLELRPseVEAVAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEIVTIVEQEANHNGPVFVDRFTEALHYYS 523
                           *******************98889**********************....*************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353
                           +lfdsle ++   + +++++++++lg++i nvvaceg +r+erhetl +Wr r+e++GF p++l+++a kqa++ll+ ++ +dgyrvee
  HL.SW.v1.0.G031294.1 524 TLFDSLEGSV---NGQDKMMSEVYLGKQIANVVACEGPDRVERHETLTQWRTRMESSGFAPAHLGSNAFKQASMLLALFAgGDGYRVEE 609
                           *********7...999************************************************************************* PP

                  GRAS 354 esg 356
                           ++g
  HL.SW.v1.0.G031294.1 610 NNG 612
                           998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120418.2E-3764131IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011296.9E-3764137No hitNo description
PROSITE profilePS5098567.292245609IPR005202Transcription factor GRAS
PfamPF035146.6E-126271612IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MKREHPNQNN RLPSNSNNLG GARSDPSMDP SSSGAGVGGF AAGKAAKMWD EDDCCGTQPD  60
GGMDELLAVL GYKVRSSDMA EVAQKLEQLE EAMCSVQQDN LSQLASDTVH YNPSDLSTWL  120
ESMLTELNPP PNFDSVMVPP LPLGPAVPQQ RQSIEDSFLA PAESSTITSI DFPDQRNQSS  180
LVFEDSSSSD YDLKAIPGKA IYSQTQFEAS SSRESKRLKP SSDPFTTTTT TTTTSSVAGA  240
YSNDVVSATA AADDSSRPVV LVDSQENGIR LVHALMACAE AVQQNNLNIA DALVKQINYL  300
AMSQAGAMRK VATFFAQALA RRIFRLYPEN PLDHSLSEFL QMHFYETCPY LKFAHFTANQ  360
AILEAFQGKK RVHVIDFSMN QGMQWPALMQ ALALRPGGPP AFRLTGIGPP APDNSDHLQE  420
VGWKLAQLAE TIHVEFEYRG FVANSLADLD ASMLELRPSE VEAVAVNSVF ELHKLLARPG  480
AIEKVLSVVK QMKPEIVTIV EQEANHNGPV FVDRFTEALH YYSTLFDSLE GSVNGQDKMM  540
SEVYLGKQIA NVVACEGPDR VERHETLTQW RTRMESSGFA PAHLGSNAFK QASMLLALFA  600
GGDGYRVEEN NGRGEQRVPH VGLAHSTAHS HFRLATRRAK TRSGSLSQIT SRAGKCAILS  660
WVPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6026661214361Protein SCARECROW
5b3h_A1e-6026661213360Protein SCARECROW
5b3h_D1e-6026661213360Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298516.10.0PREDICTED: DELLA protein GAIP
SwissprotQ6EI050.0GAIPB_CUCMA; DELLA protein GAIP-B
TrEMBLA0A2P5CNX80.0A0A2P5CNX8_PARAD; DELLA transcription factor
STRINGXP_004298516.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein